GgaINT0048097 @ galGal3
Intron Retention
Gene
ENSGALG00000011082 | KCNH7
Description
NA
Coordinates
chr7:22588894-22590650:+
Coord C1 exon
chr7:22588894-22589086
Coord A exon
chr7:22589087-22590383
Coord C2 exon
chr7:22590384-22590650
Length
1297 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
TTGTTTGTTCTCCTTTCCAGTGT
3' ss Score
10.8
Exon sequences
Seq C1 exon
GCTTGAATCCCAGATGACTGCTGATATCCAAACCATACTGCAGATTCTGCAGAGGCAATCCACGCTCATTCCACCTGCCTACAGCATGGTGACTGCAGGTGCAGAATATCAACAGCCAGCAATCCGGTTTACACAAAAGCTTCATCCTGTAGCATCAATTAAAACAGACAGAAGTTTCAGTCCTTCATCTCAG
Seq A exon
GTTTGTGTATGTCCAATAAAAGAGCTTAAAGAAGCCTTGATAATCTTGTTAGTTCATTATGGGGAAAAAAAAATCACAACAATCTAGGTGCTTGTTCATTAGTTTAAGGAATATGACATTATTATTTTGAGCTAGCATCTCTGCACTGGACTTTTGATGCTGTAATTTCAGAAACCACATTTTCTGTGAGAGTTTTAGAGATTTATACAATGATCTTATAATCAGATCAATTTACTTAATGATCATGCATGTCACCAAAATTAGCAGAAACAGTAAGTATAAGACATAAGTGCAAGCCATCAGAAGCATGAGACCCGCATGCTTGGGTGCATCTGCCATAGGTCCCGTTCTTGAAGTCATCAGAAACACCATAAGTGAGCAGCGTGGTCATAAATATATGGAGGTGGGAGGGGACAAAAACCATGTGTGGTCCCTTGCCACTGATGGAAATTTGCACATACAGAGCTGCCACATACCTACATTTTCCAATACATGTTTTCCACTCCAGTTCTGTTCAGGCAGTGTTTCATTTTCCAAATTTGTTTGGAATTTCTGGAACTTAACAGTTTGGACAGAGATGTGGCAAGTTATTTCCTGACAGGCTGCAGCAAATAATCAGTAAATACAGTGTTCTTGGATGTATCACATTCCTCACGCATATGCTGAAACACATAGGCACAATAAGCTCAACACATCCGGAAAGCATGAATTTGCATATATAAAGACTATCAGGACAGCAAACATGCAGCAGTTTTCAGAAGTGTTTGCCCACCATGCAAACTTCTGCCCAAAACATATACATACCTCTGTCAGAACAGAAATACAGCCATTCTGCAATAAAACATCAGCAGGCACACTGCACACTTTGTATAGATTCAGAGTATAAAAGTGAAGAACTGAGTGCTGAGACTGGAATCAAAATGGTTTTAATGTTTGGACTGAAGCAATTCCAGAAGTATGTTCTAAAACCACAAATTCAAGAATACTGAAATCCATCCTCTTAGATTGGGTCTCAAGAATATTCAGACCTTGAGAAATGACAATATATGAGTATCTTGATGTCATATGAACAGGTGTGAGGGAGGGGACAAGATTCCTACACTTCTACAGTTAACCAACAGAACTGCATTCAATTACATTAACTCAAATGCAGTAGTGTGTAAAAATACTTCACCTTGCAGCTTACCTGTCAAATGTGGTTTTCTAGCAACAGTCAGAATGTGCTAATTTTCAGGAGAAACAAGAACCTAGAAGAAACTGATAAAATTATTGCCATTTTGTTTGTTCTCCTTTCCAG
Seq C2 exon
TGTCCTGAATTTCTAGACCTTGAAAAATCGAAACTTAAATCCAAAGAATCTCTCTCAAGTGGAGTACACCTTAACACAGCCTCAGAAGACAACCTGGCTTCCTTTTTAGATCAAGAACGTGACCAGTCTGCAGAGTCTCCCCCACAGCATCCTAAACCTTATCTCCCATCAATCAGGCACCCTTCCTTGCCAGAATGTTCAGTAAGCACTGTAGGAATCTTGAGTCTTCATAGGCATGTTTCTGATCCTGGTCTTCCTGGGAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011082:ENSGALT00000018056:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=NA C2=0.614
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGGCAATCCACGCTCATT
R:
ACATTCTGGCAAGGAAGGGTG
Band lengths:
342-1639
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]