HsaINT0084378 @ hg19
Intron Retention
Gene
ENSG00000184611 | KCNH7
Description
potassium voltage-gated channel, subfamily H (eag-related), member 7 [Source:HGNC Symbol;Acc:18863]
Coordinates
chr2:163227917-163230172:-
Coord C1 exon
chr2:163229980-163230172
Coord A exon
chr2:163228606-163229979
Coord C2 exon
chr2:163227917-163228605
Length
1374 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TTTTGTTCTTTTTCCATCAGTGT
3' ss Score
9.14
Exon sequences
Seq C1 exon
GCTTGAATCCCAAATGACCACTGACATCCAGACCATCTTACAGTTGCTGCAGAAACAAACCACTGTGGTCCCCCCAGCCTACAGTATGGTAACAGCAGGATCAGAATATCAGAGACCCATCATCCAGCTGATGAGAACCAGTCAACCGGAAGCATCCATCAAAACTGACCGAAGTTTCAGCCCTTCCTCACAA
Seq A exon
GTAAGTGTGGATACCATCCAACCAAGAGTGTCTCTCACAGTGTGTTTCCAGGGGTCACCTAATCAGAATCACTTGGGGTGCTGTGGAAAAGGCAGATTTCTGTCCCTATCTCTGTTTCTACTCAAATAGAATTTCTGGAAATGGGCCCTGTAATCTGCATTTTAAACAAGCCCACGCTGATTTTTATGTTCATTTAAAGTTTGAGAACAATGAAGCTAGAATAATAATTTTAAACATTAGCATTTTTTTTAAAAGGAAAACCTTTCTTCCAGAATCAACCTGCTTAAATTTACATGTGGTAGAGCTTTGAAATCTAAGGAATAGTCTTCCTGGCTCTTAAAAGGGCTTTAAGGAAAAATCTGGGTCCCAAAAGAGCTTCAAAGAAAAATCTGTAATTTTCTACAGTGCCAAAGGCTGGGAGAGGTCTCAGGAAGGAAGGGGAGGAGAAATAGTAGGCTGGCCAGATTAGACCTGAGGTTCAAATGCCATCAGACTAGTAATCTTGTCTGTACCCCACCCATCACCAGAGATCTCTAAATTTTTTTACTTGGATGATAAACATGGTAAGAGAAGCAATTTAAAGAGTCCTTTATCCTGCTTCTGAAGCCCTCAAAGGGGTCCTTTTGAATTATGTTAATGTAAGTAGTCTAGCTTTCCTTGCAATTCTATTTTGGGAATTAGTCTTAATTAGTTAAACATTATGGTGAAATTGGACCTAAGAACAATGATTTAAATAAAGATTTGTAGAACAATCTCATAAAACTTTTTTAGATGTTCGGGAATTTAATTTAAGACGTTCTGGAAAATGAAATTACACTAATAAGAGAAGGTAATGTGTCAGAAGGAAAATAACGCAATACTTCTAAAAATCTGAAAGTAGAAATTAATTTAACTAGTTTTGAATGACTGGGAAACATGTAAAACCATCTATTTTGTTCTTTGTTTTCAGTGGATTTAGGTAATATTATCTGACTAGGGATGACGGATTTTACTTCCCATCTTCCCATCTTTTCTTTCCTCCTTATACCCTCTTATTCATCAAGTGATCCCATTCCTCATCCCAATTTGTCTTAAATTTCGAATTTAATTCATCTGGAAAACTCAATGTAAAATAATATATATTTTTTTAAATCTGATTTTTAAAATCTGGTTCCAGGGTTAAATAAAAGTTCTTGGAATGGTTGTTTAGGATTATCTGTACTGATAACCAATCTCCGACGTCCTGACTCATTTTAGGAGGGAAATGTTGGCTAATATCACTAATCAAATATAGATTAATGAGGAAAGAAAATGCTTAAGTTTTTATTAGTGTAATTTTCAATGACTATCTATCAATGTGAATTATAAAAACTTGTTTTGTTCTTTTTCCATCAG
Seq C2 exon
TGTCCTGAATTTCTAGACCTTGAAAAATCTAAACTTAAATCCAAAGAATCCCTTTCAAGTGGGGTGCATCTGAACACAGCTTCAGAAGACAACTTGACTTCACTTTTAAAACAAGACAGTGATCTCTCTTTAGAGCTTCACCTGCGGCAAAGAAAAACTTACGTTCATCCAATTAGGCATCCTTCTTTGCCAGATTCATCCCTAAGCACTGTAGGAATCGTGGGTCTTCATAGGCATGTTTCTGATCCTGGTCTTCCAGGGAAATAATCATTTTGTACTATTTACTCCACATACAATGTAAGTGCTTTTAATGGCTGTTTTCCTTTTTCTATTTAAATCCTCTCTACTTGACTCAGGGGCTCACAAGGTACCATTATATGCAAAAGTACTGTATATTTTCCTAAATTGAAGCTTGTAAGGTAAAACTGAGCAGTTAGGATGTAAATATACATAAGAACTTTTGGTTCCAAATGTTAAAACTGCCAGCATCTCACGGCACCTTATTTTTTATTTTTATTTTTTAAATCACATGCATGTTAGGAAACTCCAATTTCTCTTGCATGGAGACTCCTATTTACTGCTTTTACTAAACCAGTACTTCGTTATGAAAATGCCTTCCACGCAAATAAGAAACCAAGGGATAAAACTGTTCATGGATGCAACTCAAATTCAGATGATCCTCAACTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184611-KCNH7:NM_033272:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=NA C2=0.432
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCAGCCTACAGTATGGTA
R:
ACCCACGATTCCTACAGTGCT
Band lengths:
348-1722
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)