BtaINT0079678 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024507 | KCNJ9
Description
potassium channel, inwardly rectifying subfamily J, member 9 [Source:HGNC Symbol;Acc:HGNC:6270]
Coordinates
chr3:9705464-9709562:-
Coord C1 exon
chr3:9708713-9709562
Coord A exon
chr3:9705832-9708712
Coord C2 exon
chr3:9705464-9705831
Length
2881 bp
Sequences
Splice sites
5' ss Seq
CGGGTGCGC
5' ss Score
6.64
3' ss Seq
ACCTATGCCCCTCCCCCCAGGAA
3' ss Score
11.95
Exon sequences
Seq C1 exon
ATGGCTCAGGAGAACGCAGCCTTCTCGCCGGGCACTGAGGAGCCGCCGCGGCGCCGCGGCCGCCAGCGCTACGTGGAAAAGGACGGGCGCTGCAACGTGCAGCAGGGCAACGTGCGCGAGACGTACCGCTACCTGACCGACCTGTTCACCACGCTCGTGGACCTGCAGTGGCGCCTGAGCTTACTCTTCTTCGTGCTGGCCTACGCGCTCACCTGGCTCTTCTTCGGCGCCATCTGGTGGCTGATAGCCTACGGCCGCGGCGACCTGGAGCACCTGGAGGACACGGCGTGGACCCCGTGCGTCAACAACCTCAACGGCTTCGTGGCCGCTTTCCTCTTCTCCATCGAGACGGAGACCACCATCGGTTACGGGCACCGCGTCATCACCGACCAGTGCCCCGAGGGCATCGTGCTGCTGCTGCTGCAGGCCATCCTGGGCTCCATGGTGAACGCCTTTATGGTGGGCTGCATGTTCGTCAAGATCTCGCAGCCCAACAAGCGCGCCGCCACGCTCGTCTTCTCCTCGCACGCCGTGGTGTCGCTGCGCGACGGTCGCCTCTGCCTCATGTTCCGGGTGGGCGACCTGCGATCTTCGCACATCGTCGAGGCCTCCATCCGCGCCAAGCTCATCCGCTCGCGCCAGACGCTGGAGGGCGAGTTCATCCCGCTGCACCAGACCGACCTCAGCGTGGGCTTCGACACGGGCGACGACCGCCTCTTCCTCGTCTCGCCTCTCGTCATCAGCCACGAGATCGACGCCGCCAGTCCCTTCTGGGAGGCGTCGCGCCGCGCCCTCGAGAGGGACGACTTCGAGATCGTGGTCATCCTCGAGGGCATGGTGGAAGCCACGG
Seq A exon
GTGCGCGCGGCCCTGAGGAGGAGGAGCAGGGGAGGGGAGCGGGTGGGCGGGGAACTGGACCTAGAGGAGCCAGGGTGGACGAAGCAGGGGGCGAAGAGGGATGGGGGGACTGGTAGAGAATGGATGGAGAGGCTGGTAGAGGATGAGAGAGGCTGAGGTGAGATTCGGGACCTGGGTTGGGAGAAGTGTGTGAACAGAGTGATCCCCCAGAGAGCCGAGAAAAGGCAGGAATCCTCTTGAAGTAGCCCTGGCCAGGGCCCTGGCTGAGAAGTGCAAACAGGGGACGGAGAAGCCTGGTGCGCTGCAGTCCATGGGGTCGCTAAGAGTCGGACACGACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGAAGCCTGGTGGGCTGCCGTCTATGGGGTCGCAGAGAGTCGGACACGACTGAAGTGACTTAGCAGCAGCAATGACAGTAGCCAACCCAGTGCTTACTCCCTGCCCTCCACGTTTCCAAAGCACTTTACCACTCTGAGCTCATTTAATCCAAGCCCCATGAAGGACCCTGCTGAGGTTATTTCTCATTTTTGTGCTCATTTTTCAGGGAGCAGAATGCCCCAGTGAGAAGTTAAGTTGTCCACAGTCATAGGCTAAATAAGCAGTGGACACAGGCAGTCTGGCTTCAGTGTTTAGGGTGCAGAGTAGGAGGGAAGGTTAAGGTTTGCAATCTTTTTCAATACTAAGGGGTCCAGGCTTCTGGAATTTGATGGTTAAGGTTTTCTATGACCTCTTATTCCTAGCCTGGACCTTAAGGAGAGGTTGACAGCTGCTCGCAGCTCTACCTGGGTTTCCCAGTCCATCAAAAGGCTCAGTCTTCACCAACAAAGGAAACAGATGACCTGAACATTTCGAGCCCCTTTCCAGAAGGAATTGGCAATGTACCTGTAATGTCAGAATTTCCAACTCAGGCCTCCACAGTGAAAGGTTTGGGAGCAGGTAGGACAAGACCAGTGTAGCAGGACCAGCAAATGAGTCCTTTGATACTTGAGATCTAAAAGGGAGAGGGTATTTCCCTGGCAGTCCAGCAGTTGAGACTCTGAGCTGCCAGTGCAGGAGGTTGGGGTGGATCCCTGGTCTGGGGACTAAGATCCTGTATGCTTTGGTGGGGCCCAAAACATGTTTTTTTAATGGGGATAGAAATGGGAGAAGCTTGCAAGTGGATAACCCAAGGCCCACCAGGTGGCCCTGTGGCTGCTGCCTGTGTCCCCTGCTGGCTTATCCGAAGTTGGGGCCAGCAAGCACGCTCCACTCCGAGCCTGTACCACTGTCTGCCCCAGTCTTCCTCACTCCTTCCCCCACACCACACCCCGTTCCTTTCGCTTCCCCACTCACCCAGTTTCCTTTCCTCTCATCTCACCAGCTGGCACTCTTGCTGGTACCTGGGAGATCCCTGCCCAACCCTCTTCTCAGGTACCACCAGCCCCTCACCCTCTTCCTCGAACCCCCTCTCTCCAGGGTCACTTTTGTTTCCTCTTCCCCTCCTCTCCTGGACATTTCCTATGCCAGCCAAAGGAACAGAGAATACCAATGTCCCCACACTGGCTCAAGGTGGGGCTTTCAGTGTTAAGAGCCAGTCTCTGGTCAGCTAGTGTTCACTCTTCCGTTCTCCTTTGTTCAAAGGTAGATATGAGCTGAGGGGGATGTGAGAGACCCCAAGTAGAAGAGAAGCGTTTGCCGCAGTGGCTGTGGCCACCCCACAGGGAAAACAGGACACATGGCCATGGCAAGGAGTACGGGGGAGGGTGAGGTGAAGGAGAGAGGGAGGGGAGCTTATCGGATTTTTCTAGAGAGACAAAGTTGGAAAGGATGGTAATATTTTGGGTGAGAGAGTCAGTATCCAAAATGCTTCTGAAAAGCAAGTATAATGAGCCAAAAACCCAACAAGATGACATTTAAAAGGAATAAATATAAAGTTCTAGATTTAGGCTTAAAAAAAAATCACTTATGTAAGCACAGCATGGAAGAGCTCTGGTGAAAAAAGAACTGGGGGTTTTAGTTGGCCACAGGCAATGTGATGCAGCTTCCCAAAATGTTTATATAATGTAATCTTGGGCCCTATTAGCTAAAGATTCATGGGCAGAAGGAGAGGCAGTGAGCCCTCTCTTATGCGTGCATCAGGCCATGGTTGGAGTATTTATCACATTCAAAGTGCTTAAAGCATCCTCCTTGGCCGTTCTGGTTTGCAGTCAAGAAAGTAAAATTTTTGGAAGCCAGGTCACAGGAATGGTGAAGGGAGACAGATATTCAGTCTGAAAGAGAGAAGACATGATGAAACTTGAGACTCCTGCTTCCAGTTACTTGAAGGGGTGTCATAAAGCAAAGGAATGAGACTAAGGGAAGCAGATTTGGGCTCTGTATAAAGAACAACTCAAATGTTAGAGCTATCACGCAAAAGAAGGGATTCCTTGTGAGGTGGTGAGGTCTTAATCCTAGGAGGTAATCAAGTGCAAGCTAAATGCACATTATTGGGAATGCTCCAGTGGGGTACCCTGTATAGAGAGGCAAGTTAGACTAGATGATCTTCAAGGTCATTCTCAAAGTTAAGCTTCTCTGATTGGCATCTCCAATGGAGGGGAAGGGAGAATGTGGGCCAGAGATGAAGAGTTGGGGTAAACGGAGGGGAGGAGGGGTACAAGAATTGGGACGGAAGAGAAAGTAGACTGGACCAAAGGGGGTTGGGGGCCCTTGAAGAGGGCTACAGGGAAGAGTTTTAGGAATAGGATTGTGAAATGACACAGGAGAGGTAAGGCTGGGGCTGGGATCCCCTTGACCTATGCCCCTCCCCCCAG
Seq C2 exon
GAATGACATGCCAAGCTCGGAGCTCCTACCTGGTGGATGAGGTGCTATGGGGCCACCGCTTCACCTCAGTGCTGACCCTGGAGGATGGCTTCTACGAAGTAGACTACGCCAGCTTCCACGAGACCTTTGAGGTGCCCACACCTTCATGCAGCGCCCGGGAGCTGGCCGAGGCCGCGGCCCGACTGGATGCCCATCTCTACTGGTCCATCCCCAGCCGGCTGGACGAGAAGGTGGAGGAGGAGGGGGCTGGAGAGGGGCCTGGAGAGGAGGCGGAAGAGGAGGCGGGAGAGGGGGCGGGCGAAGGGGCTGGGGTTGACAAAGAGCAGAATGGCTGCCTGCCACCCCCAGAGAGTGAATCCAAGGTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024507:ENSBTAT00000034072:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.385
Domain overlap (PFAM):
C1:
PF0100715=IRK=PU(76.9=91.2)
A:
NA
C2:
PF0100715=IRK=PD(22.8=62.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]