GgaINT0138716 @ galGal3
Intron Retention
Gene
ENSGALG00000001181 | O57651_CHICK
Description
NA
Coordinates
chr24:1123896-1134344:+
Coord C1 exon
chr24:1123896-1124835
Coord A exon
chr24:1124836-1134018
Coord C2 exon
chr24:1134019-1134344
Length
9183 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
ATCCCTCTCTTTCCACCCAGGGA
3' ss Score
10.27
Exon sequences
Seq C1 exon
ATGGCCAGAGATTCTAGGATCTTCATGAACCAGGACATGGACATCGGAGTTGCATCCAGAGAGCCTAAGAAGATTCCCAAACAGGCTCGGGATGACGTCCCCATTGCCACTGACCGAACCCGACTCATAACAGCAGAAGGTAAGAAGCCACGGCAGCGGTACATGGAGAAAAGTGGCAAGTGCAATGTGCACCATGGGAACGTTCAGGAAACCTACCGATACCTTAGTGACCTCTTCACTACACTGGTGGACCTCAAATGGCGTTTTAATCTTCTTGTCTTCACTATGGTCTATACCATCACTTGGTTGTTTTTTGGGTTCATATGGTGGCTCATTGCCTATATCCGGGGAGACCTGGACCACCTTGAAGATGAAAACTGGATCCCTTGTGTTGAAAATCTCAGTGGATTTGTTTCTGCGTTTCTCTTTTCTATTGAAACTGAGACAACAATTGGGTATGGCTACAGGGTTATAACTGAGAAGTGCCCAGAGGGCATTGTACTGCTCCTGATCCAGGCTATTCTGGGCTCCATAGTCAATGCGTTCATGGTGGGATGCATGTTTGTCAAGATCAGCCAACCAAAGAAGAGAGCTGAAACCCTCATGTTTTCTAACAATGCAGTGATTTCCATGAGGGATGAGAAGCTCTGTCTCATGTTTCGTGTTGGAGACCTCCGCAATTCCCACATTGTCGAGGCTTCCATTAGAGCCAAACTGATTAAGTCCAAACAGACCAAAGAGGGAGAGTTCATCCCCTTGAACCAAACGGACATCAATGTGGGATTTGACACTGGAGATGACAGATTGTTCCTGGTGTCACCTCTTATCATCTCACATGAAATCAACGAGAAAAGCCCCTTCTGGGAGATGTCCCGCACCCAGCTGGAGAAGGAAGAGTTTGAGATTGTGGTCATTCTGGAAGGAATGGTGGAAGCAACAG
Seq A exon
GTAAGCACTTGTCAAAATCAGTCACAATTTGGAGGGAGAAAAGGGAGAAATTTCACTGCCAACATATTGGGGTTTATCATTCCCAAGTGACTCCTTCAGGTAAGGTACTGTTGTCTGATTTGGATAGTGATTGAAAGAGAAGTCTAGCTCACACTGTAATGTTTGGAGTCACACAAGGAGTTAGATGAAGAGCTGTCCATAGTCAATTAGAATAGATCCATAGGAAAAAAAGGAATGAACTGAACGAATCTGTAAGGTCTCGTGTGGTTCTGTTTTCTGTGATCAAAATTCATGTTGCAAATCCTTTTCCATTTCTCCTCTGTATTAAAATTTGGCTGTAACTGCTGTTTTAGATAGTGCTGTGGTATTGCTACATAATGGAGGCTGTGAAGGAACTGCCCCAGTATTACAATATCCCATAAAACAGCATGTGCTGAAACTGGATGACTTGCACATGATGCAGGACATGTATTTAAAAAGGAGCTCAGGGAGGAAAAATACCAGCTGTTTAACAGCATAAAACAATTCTGTGCAATAGGCAGATTAGGAGATACGCTCAGCTGATTCCCAGCTTCCTCCTATGGGTGTTTTTGTGGTAGGCAATGGAAGAAATCTGCTTCCATATAAAATGAATCTGGAAAAACTGTGTGCCTCAGCCTTTCAAGGTGTGTAAAAAGGGATATGGTGGTGTGCTTCACAGGGTGAGAGTATGGATGTCTGCAAAGGCCCTCCATGTTCTTCCCAAGGGCAGGATACAGTACATCCCTGTGGGGTCTGGCTAGTGGAGAAGATGCTTTTACTCTGGAGTTATAGCTAAAAGATAAGGCATAAGGGATCATTTTAGCACTTGCAGCTAATTCATTTATTCTAGGCATTGAGAAAGAGCCAACAGGGAGCAAGCGATTTTAAGCAGCCTGAGATGCGGATGCTCCCTTCAGGCAGGCTTTCTCAGCCTGGGGTTGGCAGCGTGCCGTGGTCAGATCAGGGTCCTTAAGGGCAATGGGACTGCAGGCAGCAGGGAGGAGCGAATTACTGTCTAGAGATGTGGGAACCTAGAAAGACTCGAAGATACAGAAATGCTTTTATGAATAATTTTGCCCTTTGGCATTTAAGGATTTTTCTTATAAGACTGCTCTGAACCCAAGTATTTTTTCTTCTTGTTGAAGCACCCATTCTCTCTGAAGCACTAACATGGGATTTCTGCTTGATGTGGGTTCTCAGTGGCATCGGCATCCTGTCCTACAGATTCTGCCCTTAACTTACAATGGATACTGTCCCTTCCTTGTGATTTGTCCCTGTTGGTCTCCTAACAGCTGAACATAAGGAGGAGGAGTATCTCCAAATCCTGCAGCCCAGAACTTCAGATCTGAAGACAGCACTCTAGAAAGCTACCTCTGTTCCCTAATATCTCCCTGCAGTCATTAGTGAATAGCAATAGGTGAGCATTTCTAATGGGTGGTTATGCACAGACTGCACTGTGCTTAGGTTGGAGTACTGCACTGTATGGGTGGAATTCATGTGGCATTGCTAGGCAAATATTCTTTGCCAGCAGAATACTGTAGAGATGTGGCAAAAGAAGAGGGGGTGGAAAAGAATATTAAAGGGGAGGATTTGTAATGGGAGCTTATTTTGTAGCCTAAACAATTACCAGATACTAGAACCACCTAATGCGAGCATGGAATGCAGTTCCTTGCGTGTCCGAAGCCTCTTCCCTCATCACACTGTGACACTATCAAATTCTTTTTGAACAGTACTGCACTGCTGTCCTCCTATGAGAGCTCAGTCTCTGCTGGATGTGTGTGAGGGGAAGTCATTATCAGCAACAGCCTTAAAATTAAAAGAATGGCATAGGAATAATATTACTTTACAAATGGGCTCCATTCCCAGAGGGATTGTACAGACCAGTGTGTAATGAGATTAAGGAACAGACATCTGTGGAAATGATTTGTTATGGTCTCAGAAGACACGTTGTGAAATTTCAAAACCAGAGCTAGGAGAGCCAGTTTGCATTGGGCTTAGAGCAGAGTGGGAGCAGACCTCAGGTGATGGTGTGATCTGATTCAGAGGCTGAAATGATTTTCCGAATGGCACATGGGTGATGGTTTGTCCCAGCGAAAGGAGCTTGTGGACACATGGGGTTTCTGCTTCCCTGCCTTGTCCTTACACTTCATAATATTGATTAAACCCATTCTAGAGACTTTAATACTGAAGACCCTCCCTCCATACCATAAACTTTGCTCCCAGCAAATTCTTTCGGTTCTTTCCCTCCTATTGCCTATGCCCCATCTGCTTTCAGGAATGGTGTAATTTACCTGCAGTGCCACTTCTATTAAATGATGACACCACTACAACCTGTTCGGGTTTGGGACAGCAAGAAAACACGGCAGGCTACTTGTTCCCTTAATAACCCCCTATGGGGCTATTAAGCACATCCAGCTCTGCTCACGGTGCCCCAGAGCAGACAGGTCCTGCATGCACCCCCAGGGGAGCTCAGCTCTGCAGTTGTTGGCAGGAGGGAAAATGAATGGAGACTCTCCCAGTCTGTACAGAACAACAGATCATACCCTGCAGCCAGGGGGGAAGATGGCTGTGTTTGGTAAGGAGTTTGAAAGCGGGCCAGATCTGACTGTGCTGTGATTGTTAACATGTAAATGACCAATGGCATTCTGAGCATCGTCTCTGAGTGAATAATGTTCAGTGAGTAAACGTTGAGGGGAGCAATTTCATAACCACTGCCTGTAGTTTTAGATAGCCACACACTGTCCAAGAAATGCCTTGTCCTGCTCTCAGACAGGTAACTCTTCTCACTGACCTTGAATTCCCATCCCATGAAAGGCAAAGACAGTAAATAGTTTCAAATAAAAAGTGATCTTTTGTTTGTTTGTTTAAAAAATGTACGCACACAGGAAGCACATCAGCCAGCCTGAAATGCTGGGTTTTCCTTTGGCTGAAGAAGAAAATAAGCATTTTATTAGTGCAGTGAGAGCTCTCCAGGGACCCACAGCCATTGCACTCCCACCCCACACAGCCAGGCTGCAGCACAGCTGCTGCTCAGGGCCTTCCCAAGCACAGTTTCAGTGTGGTTGTGGCACTGTGACCCCACAAGAGGTTAAGGGCACCAAAGGGAGGCTGCATTTCTGTGCAGATCTGTGGTGATCATTGCTGAGTGAAATAACCACTGGAAGGACAAAATCAATATAGATGACAAGAGTTCTGACTTCCCTGCTGCTTTGTGGGCATCCTGAAAGCAGCAGCTCTGCTCTCAGTGCTCACTTAATGAATCGGTCATAGAGATTACTTTAGGGAATTAATTCTCTTGTGCCATATCTTAAAGAGACACTCGTCCAGATCAGCTGGCCCAAATTTGACCTGCAATAAAAGGAAAGAATGAAGGTGGAAAATCTGTTTGCCAAGTGAATACATTTTTGCTTTCACTGTCTTTCTGCTTCCCACAATGGTAAGAAAAAAAAAATGAGAACCATCCTATTGACAGAAGGGGGCCAGGCTGGAGTTGGCCAAACATCTTGGCCTTGCCCTCCTGGTACTTAATATCTATCAGGGCTGCCAGGGCGTGCAAACACAGTGGGGATTCACTCACCTCTTCTGTGTGCTTGCAGAGTCAGCTGGGTTGTGTGGTGGAGAAATGGCTGATTCAATTAGAGAACATGAGAGACTCCATTTAAAAAAAACCATGTCACCCTCATTCCCATTGACGAAACAGTCTACGTACCAGAAAAGACCTCTTCCAGCTTTACCTTTCTGCTGTTACTTAGTGACAACTAACCAAGACTAAATGTATCAGTACCTGTCCTGTAAACCTCATTCTGAGTCTACAGTGTCCACTATCGCTCATGTCTGGGCATAGAGACGTTGGTGCATTGGTGTTTGTCACATCACCCCTGGTCCTCAGTGGTTTTTGCTGCCTCTTTTCCCCATCTGTATTAAATACCACACAGTCTAAAGACCTAACTAGTCCATGGCAGAACAAAATTATAGTAAACACCTGGAAAGGACAGGATAGGTTGATATATTTCTGGCTTACAGTCTACATAAATATATATATATGTAGTCAGCCATGTGTCAGGATTCTGCATCTCAGTTCCTCATCCTGTCCCTATGGGAATATAGCCCTTTTGCATCTCAAACCATCCATCTATACAGAGGATACAGTCAAATGCTGTGGCTGTAAACGTAGGAGAATAAGAAGCAGTCACAACGTAATACATTCTGAAATTAGTCATGATTTTCTTGGGAGAACAAAGGAAGGCTGAAATTAATAAGTGGATTTCTCATGCATTCAGCATCTGGTTTGGGTTCTCTCTTTGTTTTGTTTTGCATTTTGCATATAAATACATTTTCTCTTCTGCAAGAAGGACCTTGCAGAACTGTTACAGACACCGCCTATGTAATTAAAGGCAAGAGATAGACACCTGCAGACATTGCTCTCACCACCCACACTGTGCTCTGTGGGCAGATGTGGGCACACCTCTTGTCTTAGATGTCCCTGCAGTCACTATGAATGCCTTTGTGAGGAGTCTGCAGCTTTGGGGGTACCTGGGCCTCAGGTTCTGCCTGGCAGAGGCAAGGCCACCAAACTCAAGGTTTTCAAATCACAATACCCTTTTATTACTATTTTTTTCCCAGTGCTTGGGAGCTTTTCCATGCCTGGAGAGCATTCAGAAAAATTAAAATCCTATTACTCTCCTCTGGCATAAAAATCAAAGTGAATCAATCCTGGACATGTCCTCCTCTCAAAGAGACATGCATGAATAATTGGAGGGCCATGCTCCTACCTTCTAATATTCCTTTTGAAGTTGGAGGAATATTGACTTTTTGGAGGTTGCAGTGTTCCTCGGTCTAATTAATGCAAAGAGACTAATAGCTTTTATAGCTATTGAAATGCTGATGCTAATCTAAAGACGTGTATTTCTTAATTGGAGTGATAGAAGTAAATTTTTTATAGCTACTGCTTGCCATCGGTCTGCTGCTATACCTCTGAGTCCATCAGTTCTTTGTCTGTACTCTGGCAGTGCAGCTGGAGCTCAGCTGAAGCAGCAGTCTGCACTGTGCAGCCTTAGTGCACCTGGTACAAGGGGAGAAATCAGTGTGTGCACAATAGCATACGAAGCCAGGGCCAGAGAGGTGAAATCACCTCCAGCAGTGTCTGTGGCTAAACTGCAGAGAGAGCCGAGCAAATACAGCAAACATGCAGTCAGCATCCACATGATGCGCTGCCAGCAGATAATCACTGAGCCTCGTGGCATTTAAATGAGGAGAGTTAATTTTAGGCTGATGAAAAATGTTGTCTTGACAGCCCCAGGGGTTGGGATGGCTGTACCCGCTGAGGAAGTCCAGGCTGTGTAACAGTGCCAAACGATTCAGCTCTGCTGCTGATGTGATCCGATGGAAGCCTGCAGCCATTTCTTGGCTGGTGGGTCATGCTTTGTGGTCCTCCTGCCCTCTCCTGAGAAACTGCCAATATGGGTACGGGCTGTGATGGTACATGGGGGGAAAAAACGACCTCTGAAGTTGGAGGGAGATGGCTGGCTCTTCTCTGGGCACCCAAACAGCTGCACAGTGCAGTTAGAATTGGCCCACGATAATGAAGTTTGATTTTAACTGGTGACCTGAGGGTAAGCAAGGCCTGGAAATCTGGAGTGCTTTCCTGCAGCTTTTCCCCTTTCCATAGCAGTGAGGCAGAGCCAGCAGCCTCCACTTGCATAATCAGTGGTGTTGCAAGCAGTGAAACATTCTGAAATCTGCAGCTCTCATTGAGTACATTGCAGAAAATATAGGCTCCTCACTGAGAGAGCCATCAGATAACTGCTTTTTGTCAGCACGTATTTACATGCCTTTGTCTTTGATAAAATGTAAGCTGCTTGATCCCCATTGATTTTGATGACAGAAAAGTGCCTATTTGGTGGAGTTCCCTGACACCAATTTTACACAGGAATCTTTCCTCAGTCTCTCTGTTCTTGAATGCAATGACACACCTGGTTTAACACACACTGCAATATATTTCACATCTTTTCATCAACTGGAAAGCAGAAACAAGCCATTCTGAATGTATATCTGGCTGCTGTGGACAGGACTATGCACAGACCCCACTACTGATCCTGGTCAGCAGAACCAAAGTCCACTCCTTAGGGTTCCTCTGTAATGAAATGATCATCAACGCTCTATGAAATGCTTATTGCAGAAGTTGAAAGCAGGAGGCCCTCCTGTGGTCTCCAGCTATCTGAAAGGCCTGGAGCTGGCTCCAGCTTTACTGAAAACTTGGTGTGTCTGCTCATAATGTTGTGCTTCTAACCCTTATCTGGTTTCAATTCAAATGCAGTTTTGTTTGCAGTTGAAAGCTGAGCTCTGAGATGAGGTGGGTGGGGGAGATGGAGCTGGAACTCGAAAGGTGAAAGTGTTGCACATCGTTTCCCATTTACACAGCTGACAGGCAGTACCAGTTTATAGAAGAAATAATTCTTCATTTTTAAACCAGATTGTTTAGGAGAAAATTAAACCTTTACTGGACTGGCCAAGAATCAATATGCTTGGAAAGTAAAAATCTCTGTGATTTTTACTTGGATGTAAGTTTTGAAGCACAACTGCTTATGCTGACAAAGGAGAAATGAAGATATTCTTTGGCATTAAATGTGTTTGAATGAAATGCCCCAGTCACCAAGTATTACTTCCTTCCTTCCTTATAACTGTACCAAATATCCACACCATTTAAACCTAAAACATGTAATTATATCTATTTTAAGAAAAGCATTAACAGCGTTATTCAAGACCAAGTATCATACTGTGATTATTTTTGCAAGAAATTCAGGGAGTTTGAATCTCCCCCAGTTTATTGCATGCACTGTGCAGGACAGCAGCACTGCAGACAGCTGCAGCAGGAGCACACAGGGCAGGGCTGCTGCAATGGAGCAGAATGGCAGTGACCCATTTGGTGTGGTTCTTGATGGATGTGAGCATAGGACGTAATGGTCCACTTACACCCATGGACTTGGACAGGCAAGGCTTGTGAAATAGGACCGCTGGTGTTTGCAGTGAGTGCAGAGTGGTGCATGAAAGGTGTGAGCCTAGGGAATAACAGCCCCGCTGCAAGCCAGAATCCAACATCCACAGCACAGAAGGCAGAGTGCAAGTTGTATGCAAATGGGAGGCGGCTGCATCCATGCGCTGTTAATAAAAGCAAGGTTTATTGTTTCCACACCTCCTCTGTCATCTTTTTGCAGTTACAAAGGCAGTGATTAGCCAGGGACATTACAGTTGCATTAATTAACCAGGCTGAGGAGCACGGGGCAGCCTGCAAAGCAGGCACTTAATGGAATTTGAGGCAGAGACAATGCTGCTGTTTACTGGGTAATGTAGGAGTTGCCAAGCAGTATGTCCCCACGCAATTAAAATACCACTGCACATGTGCTAAGAAGGAATATTGGAACGGGATTATGGAGCAATTACAAGTTGTCTTATTGTGCTGGCTCTGCATACCCCTGGGGTTACAGAAAGCAGCTCCTGCAGGAAGCTGGCAGCGAGCAGTATTTGGTTGATGAAAGCTTTCTATTGTTCCTTCCTTAATTGAATATTTACAGCAGGAAATAACTGTGATCGGGTCTCTGGAGTTCGGGTTCACTGTCAGGTTCTCCCCCAGTGGAAGAACTATTTAAGGCCATGATTACAAGGCAGGAGTTCCCTTTGGATGCCTCAGACCTCTGCATTTAGCAAGGCCATTCTTTCTTGGCCTGGGTTCACAATGCCATGCCTATAGGCAGCTCCTGGAAAGCCATGGTAGAAGTCAGTCTGTCTGCTTACAGCTCCTAGCCCTGTGAATGTCAGAGGCCTCTTCTGCATTCCTGGGCTTTGAAAGCACTCAGTAAGAGGCAAGTAAAGTCTTCAGCAGATCTTGCTTGTGTTCATGTCTTAATGGACTGTAGCAGCAATATAAGAAACAAGCTTCAGTCTGTTGGAAGGTAGCTTTTTGAAAGGATAAGCTTTTTGATTACTCTGAGATATCAGGCAGTCCATAGAACTCACATGGTGACAACACATATCCTCTTTCCTGAAGCATGTGACACCATCACTTTCCCCCTGTGCGTTATTTCGGATCTCTGTTTGCATACTTGCAGCTGCAGGAGGTAGGCTTGGAAGCATTGGCTGCGAACTGGATCAAGTGCATGTTTTGAATGTATTCCAGTCAGGGCCATCACTCACACCCCAAAGGAGAGCAGAGGGAGGGCTTTGTGAGGTCAGCTTTCCTACATTTCTCCAGAATTAAGAGCAAAACGTAACACATTCAGGGTGAGCAGACAACAAATGTTTGGAAGAGAAGTCAGCCTCGGCTTCTCAGTCAGCAGGTGATTCCAGAGGAGGTCACTCCAATGCTGAACCCTTATCTCTGCTCTGCAAAGCCTCTTTAAAAGTTTTCAAAGTACATAAACAAACTCTGATTCTTGGGGCTGAGAAGAAGCCTGACAAAATCAGTTTCATATTGCCCATTGTTCGTTCATTCCATTAAGACACTGAATTCAATATGTTTACGAGCTTGACTATGTGATGCTATGTGCTTTGATTCAGCCAACCTATTACTGTTGGATTGAACCCTCCAAAGAAATATGTAAGCCAGCATGCCATATAGGTCATATCAATGGGGACAGGGGCCTGTTCCTCCTTACAGACTGCATCACTTGGTGTGCAAGGGGAATAGCTGGTGGGGCTGTAGCTCAAGAGGGACAGCATGGGACACAGTGGGAGTGCAAGCGACTTTGGCAGTTCATTCTCCTTGAGGGTTGCGTGGGTCAGGATTGAAGTGCATTGGCAGGGTTGTATGTCATTCTAGCACGTGATTCAGCAGAAACACTGTTAGTAGCAGCCACGCAAGGAAGCAGCACCTCGACAGAGAAATGTGAGGACAGAGAGAAGCTGCTTAGTGCTACCAGACTTCAAAGCCTTAAGTGCAGGTTTCAGGAAGCAGTCTGAAGATACGGCGATGAGTCCACCCCTTTTCCTTTGAGAGCTCAGCTTTTTCATGATAGAGGCTTTTATGAGGCTTATTAAGTGAAGACTTTGTCTGTGTCCCAGAGCAATCAGGTATGGAAATAACATGAAAGTGCTTTTAAATGAAAGAAGTGGCTGGATGAGCATGTAAGGAAGCTTTGCATTTAACATCCCTCTCTTTCCACCCAG
Seq C2 exon
GGATGACTTGCCAGGCTCGCAGCTCCTACATGGACACAGAGGTGCTGTGGGGACATCGCTTCACTCCTGTCCTCACCCTGGAGAAGGATTTTTATGAAGTCGACTACAACAGCTTCCACAGCACTTACGAAACCAACACTCCTGTGTGCTGTGCCAAAGAGCTGGCCGAGTCCCGCCGGGAAGGGCATCTCCTCAGCAGTATCTCTAGTGCCACTGTCCTGGGCGGAGGCAGAGAAGCAGAGACAGTGAGAGGGGAGGAAGAGGAAGAGGAAGAAGACAGGGAGCCAGCAGCATTCAGTGGAGCCAATGGGACAGCGGGAGAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001181:ENSGALT00000001790:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.321
Domain overlap (PFAM):
C1:
PF0100715=IRK=PU(97.0=82.5),PF058997=Cupin_3=PU(59.3=10.2)
A:
NA
C2:
PF0100715=IRK=PD(21.9=67.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]