RnoINT0077851 @ rn6
Intron Retention
Gene
ENSRNOG00000033796 | Kcnj5
Description
potassium voltage-gated channel subfamily J member 5 [Source:RGD Symbol;Acc:61971]
Coordinates
chr8:33433905-33442828:-
Coord C1 exon
chr8:33441890-33442828
Coord A exon
chr8:33437544-33441889
Coord C2 exon
chr8:33433905-33437543
Length
4346 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TGTGGCTTCTGTTTCCCCAGGCA
3' ss Score
10.02
Exon sequences
Seq C1 exon
CTATGGCCGGTGATTCTAGGAATGCTATGAATCAAGACATGGAGATAGGAGTCACCTCCCAGGACCACAAGAAGATCCCCAAACAGGCTCGGGATTACATCCCCATTGCCACAGACCGCACTCGCCTGCTGCCGGAAGGCAAGAAGCCACGCCAGCGCTACATGGAGAAGACCGGCAAGTGTAACGTGCACCATGGCAATGTTCAGGAAACCTACCGCTACCTAAGTGACCTCTTCACCACCCTGGTGGACCTCAAATGGCGCTTCAACCTTCTGGTCTTCACCATGGTCTACACCATTACTTGGCTATTCTTTGGCTTCATCTGGTGGCTCATTGCTTATGTCCGAGGTGATCTGGACCACGTGGGTGACCAAGAGTGGATCCCTTGTGTTGAAAACCTTAGTGGCTTTGTGTCTGCTTTCCTGTTCTCCATTGAGACAGAAACAACCATTGGGTATGGCTTCAGAGTCATTACAGAGAAGTGTCCAGAGGGGATCATTCTCCTTCTAGTGCAGGCCATCCTGGGCTCTATTGTTAATGCCTTCATGGTGGGTTGCATGTTTGTAAAGATCAGCCAGCCAAAGAAGAGAGCAGAGACCCTCATGTTCTCCAACAATGCTGTCATCTCCATGCGGGATGAGAAGCTGTGCCTCATGTTCCGGGTAGGGGACCTCCGAAACTCCCATATCGTGGAGGCCTCCATCCGCGCCAAGCTTATCAAGTCCCGGCAGACCAAAGAAGGGGAATTCATCCCCTTGAACCAGACCGACATTAACGTGGGCTTTGACACTGGTGACGACCGCCTCTTCCTGGTGTCCCCCCTCATCATCTCCCATGAGATCAATGAGAAGAGCCCTTTCTGGGAGATGTCTCGTGCTCAACTGGAGCAGGAAGAGTTCGAGGTTGTGGTCATACTAGAAGGGATGGTAGAAGCCACAG
Seq A exon
GTAAGACATTTTGCCCTCCTCAGCCCTGTGATCCACTTCCTACTCTATGGAGCCAGGGCTCTAGCAGGTGCAAGTTTGTGTGTGAGAATCCCAAGGTTGCAGTGAGGGCACTTCTATCCCTAATGTGACCCAAGGGGCAGTTACCCAAGACAGAGCACCAACAATAGCTAACGTGGGCTGAACTTACCACCTTCTAGGCCTGGTTCTAGGTTTTAAGCATATATTACAATGTTGGTCCTCTAACACCTCCATAAGAGAGAAGTCATGGTTTAGAAACAGAGGCTCAGATGTGAGCAAGCGCCACCAAGACAGGAGAACCCGAGAGCCAGCCCTCATGTCCAACAGATCAAAATGCTTCCTGTCCTAAGACATGCATGGAGTGGCTGGGAAAGCTGGGCTGGGTAAGAGAGGTTGCAGTGCTTTAGAGTGAAATTTCATAGCTTTATACATCACTGCTTCTCCGCCTTCCTAATGCCTCGATCCTTATGGCTCCTTATGTTGTGGTGATCCCCGATTGTGGCTACTTTATCATGCATAATTTTGCTACTGTCATGAATCACAATGTAAATATCTGATATTCAGGACATATGACATGCCACCCCTGTGGGGGTCACATCCCACAGGCTGAGAACCACCGCTGTACATGTTGTGTCCTCATCATTAGGGGAGGATAGTTTTGCTCTGTGTGGCTGTGATAAAATTTTTTTGACCTAAAGCAACTTGGAAGGGGGAAAGGTTTATTCTTTACTCATCTTCTCGGTCCCTCATTGAGGGAACTCGGGACAGAAACTCCACAGAAACCATGAAAGCGTATTGCTTACTGGTTTGCTCCCTCTTGCACTCTTATACAGCCCAGGCCCACCTGTCTCAGGGTAGTATCACTTACAGTGGGCTGGACCAGCCCACAAAAATCATTAAACAAAACAACCCCCCCCCCACCTCGCTCTGGACATTCCCACAGGCCAATCTGATAGAGGCGATTGAGATTCCCTTTTCCCTTTGCCTTGTGTTAAGTTGACGGAGATTAACCAGTTCAGGTGGTACCCAGTATGCGGCCTTTCTTAAGTTCCCAGGTATTTCCCCCACAAGCCTTATGTTTAAGAGGACCTACTCTCCAGATCTGTTGAGAGCCACAGGCGGCAACCCTCACAGTCAGCCCACCTGCTTCTTGGGAAGGAGAGCCCATCAGACAGATGCCATATCTGTCCTCCTCTGCCTTCCTTCTCCTTATTTCATCGGGTGGACTGAGAAGCAAGTTAACACAAGGGCTGACCTGTTCAAAAGTCCCCCATGCTCAGAATAATACATCTGTTTCAAAACCTTGCAAATAGCGTGTAGATGGTCTTCATTCCCCTTTACAGATACAGATACTGGGCCTTCAAAGGACTAGGCAGACATTAAGTGTGCACACTCTGGCTTTTATGTACAAGTCTCCAGCTTTTTCTACGTACCACACTGGTCCCTAAGATGTTAGAGGCTTGTCAAAGGTGGACAAGCATACCTTGTCACCCCTTGGGAATCTGGTTACTGGTTGGGAGACTCAGACAGGACCTCTATAAGCCTTCCTTCCCATTTCCAAGTCAGAGTCAGGCAGGGTGATGGCAGGCCCTAGGGACTGTGCCAAAGGCTGCCTGGCCATCTGCTGGAGGGCCGGAGCCTAGCCAGGAAGCATATGGTGGCAGCTGGAGGAGCCCCTAGGGCTGAGGACAGTCAGGAAGCAGGAAGCTGATTCGTGTGCCTGAGGACTCTAGGGTCAGTGTGTCCTTGGTAACAGGGTCAGCATAGAGCATAAGATCACTTTCTAGGGAAGGAGCTCCTCTCTGAAGTCCTGAAGAAAGGATCAGGCAGAGACAGCCTCATGGATCCCTAGTGATGTGCTCCCTACCACCAGCTGTGCCATAGGAGAGCACCCACAGGCCACCCAGCAGAAGGAGTAGAGCAGTTTGCCCGCTCCTCCCACATTTCCCTGAAAGCTCTGTCCTAACTGTCCTGCCCTAACACAACCTGTCCTAGCTCATCCTTGTTCTCTGTCTGTGAAATATGAAGGTCACTAGACCACCTACTCACAAATGACCTGGGTTGTCCCCTTGCTATGCTCAGGGAGCCTTGGCATGAATTCAGGCCGAGTTTGAGCAGCATAGCTCTTCCATATCGCTCCTATGGGAGTCTGGGTAATGTGCTTGTCATGTCTGCAAATGAGGAGGGTCAATAGCGTATGCTGGTGGGGAGACTAAGGACCAAACGGAGTGCCACTGATGAGACACAGAGTTGATATGTTCACTGGAAGGCAACAGTTGCAAGCAGCCAGGGTCTCTGGCTACCGAATAGCCTGTCATTTCCCTAGAGGACAAAAAGAACGGACAATGAGAAGATCTCTGAGGGACTTCTGCAGACACTCTTGTGGGAGTCCGTGCTAGGGTCTTTTTGGAGTCCTGGAAGCCTGCAGGCATAGGGGTGTGTGTAGACTGGTCAGTATCCAGCTTGGGTGTTTCTACCTCTGCTGGGATCATGGTTATACAACCAGAATGAGGCCCGAGTGGATAGGCCTGAGTTGGGCAGGTATCACTCTGAGAGCAAAGTGAGGGCTATAAGGCCGCCGTGTGTGGGATGCTTTGGGGGACCCAGGCTCAGATGAGTGGGAAGCAGCTTTCGGCCTCACTTTGTTTGTATGGTCCCTTTCCCAAAGAAGAACTAGGTAGGAACTGGGGAAGACCTAAGTGGGAACAGGAGAGGGGGTAGGTGGGAACTGGAGAAGGCTTCCCTTCAGTATCTAAAGAGCACAAGCTAGTCCTTCCTTGGGCAGAATGTGAAATAAAAATTTGCTTTTCTGTGACCCTAAGCACAGAGGCTTCCTCATCCATAAACAAAACAGCCCTCCTTCTCTGGAGAGGAAACAACACCTAAAAATAGCCCAGCCATGGCGGCACAGAGAAAGACTGACAGCATTAGAGCATCCTCAAATCCAGAAGCCAGGCTGCTGTGTTAGTTTGCTCCCCTTCCTGTGCATGCGTGCATGTTCATTTATGGATACATGGACATGCATGTGTTCATGAGTGTGCAGGCTTCTGGTGTATGTCCACTCAAAATTATTCCCCTGTGGTGTGATGCCCACTAGCTTCCCTCTGGTCCCTTACCTTCAACTTATCTTGTCCAAACCCTGGTCCTGCCTCCTTTCTGGCATCAGTCTACTACTAGTAAATGTCACTTTCAAAAATGATGTCCTTGTCTGCAAGTATTTCATGTCCCCCACCCTTTCCAGCATCCAGAAATGTATTCTAGAATCCTGCTTGCCCATTGGTCCTTTTCTTCCCTTAGTGTAGTTTGAGCTCCTCCACCACAAGGACCATCATTTAGCTTCATCTGCCAGGTCCCTGTCACAAAGAGGAAGTTCAAGAGATGCTTGAAAGGCCGGAGAGATGCCTCAGCAGTTGAGAGCACTGACTGCTCTCCCAGAGGTCCTGAGTTTAATTCCCAGCAACCACATGGTGGTTCACAACCATCTGTAGTGAGATTAGAAACCTTCTGGTGTGTCTGAAGACAGCTCCAGTGTACTTATATACATAAAATAAATAAAAAACTTAAAAAAAGAGAGAGATGCTTGAAAAAGTATTGGAGGAATTGATGACTGGATATATAATAGTTGGAAGGATGGAGGGTGTCTTGGCGACTTTTCTATTGCTGTGAAGGGACACCATGACCAAGGCTTTCTTATAAAAGAAAGCATTTAATTGGGGACTTGCTTGCAGTTTCTAGAGGGTTAGCCCATTCATATCATTGGAGTAATCATGGTAGCAGCAGGCCAGTATAGTGCTGGAGCAGTAGCTGAGAATTTACATCTTATCCACAGGTATCAGGCAAAGAGGAGAGAGAGAGAGATGGAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGAGAGACTGGCCCTGACATGGAATTTTGAAACCTCAATTAACAACCCCCAGTAACATTTCCAACAAGGGCACACCTCCTAATCCTTCCTAAACAGTCTACAAGCTAGAAGCCAAACATTCAAATATATGAGTCTATGGTGGCTATTTTCATTCAAGCCACCACAAAAGGGTAGATGGATGGATGATTTAATGGCCCAATATTGGTTTGACTGAGTGAATGGATGGACAGATAATGAATACACAGTTATGCAAACAGATGGACGATGGAACAGAAAAATGACTGGATGAATAGATGTATGTATAGGCAGGTGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGGAGGGTGGGTGGATAGATGGATAGATGGTGCTCCCTAAGGCATGTGGCTTCTGTTTCCCCAG
Seq C2 exon
GCATGACTTGCCAAGCACGGAGCTCTTACATGGATACAGAGGTGCTCTGGGGTCACCGATTCACACCAGTCCTCACCTTGGAAAAGGGCTTCTATGAGGTGGACTACAACACTTTCCACGACACCTATGAGACCAACACACCCAGCTGCTGTGCCAAGGAGCTGGCAGAAATGAAGAGGAATGGTCAGCTCCTCCAGTCCTTGCCCAGTCCTCCTTTGCTTGGGGGCTGCGCTGAGGCTGAGAAAGAAGCAGAGGCTGAGCACGATGAGGAGGAGGAACCCAATGGACTGAGTGTGTCCCGGGCAACAAGGGGCTCAATGTGAAGCCTGTGTGCTACCCAGAGCCTCTTCCTGTCAGACACCAAGGAGCCTGAGAGGCCAGAGAGGCCAATTAGTTGAGCAAGCTTTGTGGAGTCCCAGGAGTATGGGACTTCTACAAAGAGGAACAGTGTGGTGAGGCCTCACATCTCCTCCTCAGGGCCTCGGAGCAAGTGGCGTTGACTAGGCCTCCCAAGAAGTGTTTTCTCGGCCTCTGTGAAGGAGAGCATTAGGGGTCACCAGGGTGGGCTTCCCAAGGAGGAGTTCTAAGGTGTCATCCATCCTCTCTCTGACTGCTGAAGCCTGCTCACTGGCCTCCCTGATTCTCTGTTTCCTCAGCACAATCACTGAGGCCTGTGAATGGAGGGACTAATTCCATCCATGGATACTCAGGCCTCCAACTGGGGATGAGTTCACAGAGGCCTTCCAGGGGCAATGCCCTGCAGTCTGAGGCCAAAACCCACTGATTTAATAGCTTCTTAGCAAGGCCCCTTAACCTCTGATACTACCTACTGTGTGTTTTCCTCTTCTGTGTCCTCTTCCATGGACACTACGGCTTACAGGGTAATTGATTTAATTAGAGTGGCCCTAGGACACTGAGTACCTAGGAGCACACACAATGTCGTCCTCACAACTGCCTGGCACTCCTACTCACACTTCAAAGGACAGACACAGCAGTTGTGGCTTTTGTAGGAGTGTGTGGCAAAAGAACTTCAAAGAACCGACCTCTAAAGCGGTCCCGGGGAACATGTGAATTTCAGAGAGCCAGATTAGCTCATTGGTACTAACATAGGGATGGCAGACAGGAAAGAGACACAAGGATAATTTTAAAATAAGTATCTGGAGCCTGGTGTTGTGATGCATGCCTGTAATCCTAGCATTTGGCAGGCTGAGGCAGAATTGAGAATTTGAAGCCAGCCGGGGCTATATAGCCCTGTCTGAAAAAAGCAAGAGACAAACTACAACCAAGGAAACATCTGCCACAGTTGTTGCATGGGGGCTCCTCGGAGAAAAGTAGGCTATGAAACACAAGTGACAAGAGGCCATAAAGGCATCTTCAGTGCCAAGCCAAGTGTGGACCAGAGTCTTGGGCTGCCGCTGAGATGCCTCTGGGCCTCCCCCCTATGGAACAGCTCCAACATGGTGGTGGGACCTAGAGGGAGGTCCCTGAGAACAGGATGAGAGTTGGTGGGTGACTAGGGAAAGAAGAGTCTAAGTGTGGAGCAGAGCCTTGGGGTCCACAGCCTCAGAGACCTTTCTCTTCCAGTCTAGGAGATCTGATGGTCAGTCAGTGAAGCATTATGTTGAAAACAAAGTTGGCCTGGTCTTGGGAATATGCTAGCATGATCCCCAACACCTCTACCCGGGTGTTCATGGCTCTCAACCAGCCTCTGAGAATAGAAGCACCTTCCTGCCAGGCCCTAGAGAACTTTCTCTGGCATCTCCAAGGAGATGAGACGCTAAGGTAGGCTAGGGAACAGCATCCTAACCTCAGGCCTTGTTCCCCTTAGACAGGGTGCCCAGGTCTCTAGGCTGGTGAGAAGGTGTCCTAGGATGGCTAGCTACATTGTGGACCAGACACAGATAGAAGAGGGGAACCTTGACTTGTTATCTGGGCTGAATCTTGAAAGACAGTCTAAAGCCAGTGGTTCTCAACCTTCCTAATGCTGTGACCTTTTAATATAGTTCCTCATGTTGTGATGACCCCAATCATAAAATTATTTTTGTTCCTAATTCACAACTTTATTTTTCTACTCTTTTGCATCATAATGTAAATATCCAGTATGCAGGATACCTGATATGCAACCCCTGTGAAAGGGTTGTCCGACTCCCAAAGTCATTGCAAACCATAGACTAACAGGTTAAGAATCACTGATCTAGGGGTTGCGGATTTAGCTCAGTGGTAGAGGGCCTGGGTTCAGTCTCCACCTCCGAAAAAAAGAAAAAAAAATCACTGATCTAGGCAGGGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTTGTACATGTCTGTGAATGTGGTACGTGTGTGTGTGTGTACAGGTATGCTTGTGTGTGTGTGTGTGTGTGTGTGTACAGGTATGCTTGTGTGTGTGTGTGTGTGTGTTGTGCATGTCTGTGAATGTGGTACATGTGTGTGTGTTTGTGTGTACAGGTATGCTTGTGTGTGTGTGTGTGTGTGTGTGTACAGGTATGCTTGTATGTGTATGTATAGTGTGAGGGTTGGTAAGTGGGTGTAAGGTTGGGTAGGGATGGTGTGTGTACTTATGTGTGTGTGGTATATGATGAATGTGGTACTTGTGTATATATGTATGGTGTGTATATGCTGTGGTGTGTATATCTTTGTGTGTGTGTGTGTGTGTGTGTATGTGAGTGTTTGTGTGTGTGTGTGTGATGGGAGGGGGAGTCCCAGTCATAAGGTGGGGGTCATACATTTTCTATATGGTTAAACAGGTCTAGCAGAGAATGGGAAACAAGCTTCCATTCCTATTCAGGAAAGGAAATCAGGGACACCCAATAGGCAAGGAGTCTAAGGATGGAGCCTGTTGCTGAGACTAGACCTCTAGGGCAACAGGAAATGCAATTGCTGTCACAAGAGATGGACACTCAGCCTGGCTTCCTGGGTCCCAGGTGTAGGCAAGCAGGACCAGTTCTTTTCCTTGGTAAGCCATGAATTCTGTCTCGGTCAGAACTAGCTAATGCCTGCAGGTTAGGACCCTGAGTGAGGTGAGTTGCAAAGAGAAGAAGTAGCAGGGAATGGTGGTCTTGTGGCCGGGCAACGGTCTGGCTCCTGTTTCATACTTGCCTTATTTGTGTTTCTGAAACGTCCCCCAACTGGCCAAGAGAGACCAGTGGTCAGTGCGAGTCAGGGCCACTGGTGTGTCAATTGTGGAAGCTGTGGACGCTACCAAAGAGGTGGATACCCTCCTCAAGATCCCCTCATACCAGAGCTGATAGGTACTGGAATTAGTAAGATAGCAGACCCAATCAGATTTCTGTCATGGTGACCTAAATGCGAGGAGTCTGCCCTTCACATCCCAAGGACATGTCCATTCAGTGAACAGTTGCTGTCACTAAAGTTTAAAAAAAAATCTTCAAATAATTTTCTGGAAGTTCTTGACCAATAAATTTAAAACATGGGTTAATTATTAGATGCAAAGTCTGATGCTGGCCCATGTCTCAATGGGTCATTACTCCTACATATGAACTATGTTCGTCATGAACCTTATTGTATGACTCTGAGGTCATTCCATCCCCCATGGCTACAAAGAACTGAGGCCGGGCTGGAGAAGAGGCCATCAGTAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033796:ENSRNOT00000041038:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.355
Domain overlap (PFAM):
C1:
PF0100715=IRK=PU(76.2=82.7)
A:
NA
C2:
PF0100715=IRK=PD(23.5=74.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]