HsaINT0084473 @ hg19
Intron Retention
Gene
ENSG00000120457 | KCNJ5
Description
potassium inwardly-rectifying channel, subfamily J, member 5 [Source:HGNC Symbol;Acc:6266]
Coordinates
chr11:128781159-128787951:+
Coord C1 exon
chr11:128781159-128782105
Coord A exon
chr11:128782106-128786303
Coord C2 exon
chr11:128786304-128787951
Length
4198 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TGTAACTTCCGTTTCCCCAGGCA
3' ss Score
9.18
Exon sequences
Seq C1 exon
CATCCCAGCTATGGCTGGCGATTCTAGGAATGCCATGAACCAGGACATGGAGATTGGAGTCACTCCCTGGGACCCCAAGAAGATTCCAAAACAGGCCCGCGATTATGTCCCCATTGCCACAGACCGTACGCGCCTGCTGGCCGAGGGCAAGAAGCCACGCCAGCGCTACATGGAGAAGAGTGGCAAGTGCAACGTGCACCACGGCAACGTCCAGGAGACCTACCGGTACCTGAGTGACCTCTTCACCACCCTGGTGGACCTCAAGTGGCGCTTCAACTTGCTCGTCTTCACCATGGTTTACACTGTCACCTGGCTGTTCTTCGGCTTCATTTGGTGGCTCATTGCTTATATCCGGGGTGACCTGGACCATGTTGGCGACCAAGAGTGGATTCCTTGTGTTGAAAACCTCAGTGGCTTCGTGTCCGCTTTCCTGTTCTCCATTGAGACCGAAACAACCATTGGGTATGGCTTCCGAGTCATCACAGAGAAGTGTCCAGAGGGGATTATACTCCTCTTGGTCCAGGCCATCCTGGGCTCCATCGTCAATGCCTTCATGGTGGGGTGCATGTTTGTCAAGATCAGCCAGCCCAAGAAGAGAGCGGAGACCCTCATGTTTTCCAACAACGCAGTCATCTCCATGCGGGACGAGAAGCTGTGCCTCATGTTCCGGGTGGGCGACCTCCGCAACTCCCACATCGTGGAGGCCTCCATCCGGGCCAAGCTCATCAAGTCCCGGCAGACCAAAGAGGGGGAGTTCATCCCCCTGAACCAGACAGACATCAACGTGGGCTTTGACACGGGCGACGACCGCCTCTTCCTTGTGTCTCCTCTGATCATCTCCCATGAGATCAACCAGAAGAGCCCTTTCTGGGAGATGTCTCAGGCTCAGCTGCATCAGGAAGAGTTTGAAGTTGTGGTCATTCTAGAAGGGATGGTGGAAGCCACAG
Seq A exon
GTAAGGCGCTTTGTCCTCCTCAGCCACAGGTGGCCCTACCTACACTTCAGACTTAGGCAACTGTGACTCCAGAAGATGCAGGTCTGTGCCTGAGAGTCCTGGGGTGGCGCAGGCAACACATTCAATCCCTAAATTGTGGTTTGAGGGGTACTGGTACTCAAGATTGAGTAATAGCAATAGCTAACACTGACAGGAACTTCCCAACTTTCAGGCACTGTCCTAAACAATAAACATCTATCATCTGGCCAAATGTCCTCCCACGCCCTATGAGATATAGTGGGTTATTGTTGTTGTTGTTTTGTTTATTTGTTTATTTTTGAGGCAGGGTCTTGCTCTGTCACCCAGGCTAGAGTGCAGTGGCCCGATCTCGGCTCACTGCAACCTCCACCTCCCGGATTCAAGCGATTCTCCTGCCCCAGCCTCTGGAGTAGCTGGGATTACAGGTGCCCGCCACTGCGCCTGGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTCGGCCAGGTTGGTGTCGAACTCCTGACCTTGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACACGCGTGAGCCACAGTGCCCAGCCAAGATAGTTTTTATTAAGGTACAGATAAAGACACAGGGACACAGACAGGCTAAATTATTTGCCCAAGAGCAAGCACTTTCGAATGATAGAGCTAGGATGGAAATTGAGACCAGGGACCCCAGAGCCAGCACTTGTTTCCAACAGGACAAACTGCCCCTTCTTGGAACAAGTGTTCTACCCAGAAGAGCTCCCTGGTCAGATAGCTCTGGTAATCACAGGGCGAAACAAAAGCGAACTGGTTTCTTTACAGTGGACTTCTCGCTGTCCTTACCCACTGAGTCTCATCACTGGGAGAGGAGGGGATGCAGAATTTCCTAAACTCAAAAGGTTCTCACCAACCCCTTACTTGGAGAGACCTTTGCTGCAGGGGAAGGGCTTTTGTGGCTGGGCTCCCTCTGGGGCAGCCAGCCCTCAGCATTCTTGCAGAAGGTTGGTTTAGTGAACGCAGGGCAGGTGAGGCTCCTTTCTCACAAAAAAACAGTGCATCCATGCTGAGGCATCAACATCCATGTATGCCCAAGAAAATGCCCTTTGTGTGGCCAGCATGGCACCTCCCTGCTCAGCTACTGACTCACCAGCAGCTGGTAGCCAAGGACCCCCCAGTTCCTCAGCCACTCAGCCATGGCAGACCTCTGTGAGGTGGCTCCAGGGAGTCCAAGGCCTGGGACCGCCTGAACTCTGGCAGAGGACCCTAGTCCCCACCCCACTCGCAGCAAAACCCCACATCCTGCATATTTCATTTCTTCCTCGTGCCTTCCTTTCTCTCTCTCTCTCTTTTTTTTTTCAACCAGGTACAATGAGCAGCTGGTCAGGCCCTAAGGATGGGTTCTAGAAACTCAGTCACGCTCAGAATGATGCATGTCTATTTTTCCAATTCTTGCAAATGACAGTGTAGGGCTGGCTTCAGTCTCATTTTACAGATGTCGAGGCTGAACCTAAAAAGCATTATGTAGACAGTGAGTGTTCATATTCAGCTCTTCCACTTACAAATCTGGAGCTTCTCTCACCACTCTGCCCCACTAAAATACTAGCGGCCTGTCAGGAAGATGGCCAAGCACACATTCCAGCCCCCAGGAAGCTGGCTGCCGGGCAGGGGACTCAGACCCAGACTGCACAAGCCTTCCCATTTTGAAGTTGGTGGAACCAGGAGAGGGCAATGACAAGCTCCAGGGACTGGTGCCAGAGGTGGCTGCTCGGCCATCTGCTGGGGGCTGGAGTCTGGCAGGCAGCATATGGTGGCAGGTGGGCAGCCCCGGGGCCGAGGACAGTCAGGACTCAGGAAGGTTTCCCCCACAGAGCTAGGGGCTTGCAGGTCACCCTGCCCTTGCCTCCAGGGTCAGAATCAGGACACAGGCTGCATTTCAGGGGAAGAACTCCACTCTGAAGCCACAAAAAAGGGATTGGGTGAGAGACATGGGGTCAAATCATAGCACACCTGACCACTCTCCAAGGCCATCCTCACTCCCCAGCCATGCAGCAGGGAGAGCGCCCACAGGCTCGTAGTGGAGGGAGCCAGTGCTATCTGCCCCGCTGCCCCGCTGCACCCCCAACCACACCTCCCTCAAAGTCAGGGGCCCGCCATTCACTTGTCCTCACGGTTTGGCCTCCTTCCCCTCCCACAACCCGGGCTATGCTTGCTCTGTCCCACAAACTGTAGGGGAGATCCAGGGAGATAGGGCAGGAGACCCTGGCCCACATCTGTCCTGGATGTGGGTGGTTTGGTTGTCAAGCACATGCAGCCAGGTGTGGGCTGGGAATCCATGCCTCAGCTTGAGTAGCACAACTCTGCCGTATCCTGCCTGAGCGGGTTTGAGCAAGCTGCTTACCTTGTCAGCAAAGTGAGGAAAATCAATCTCTTAGGGCTGTTGGGAGGATTCAAGATGAAAAGGAGCTGTGCTGATCACTATACCTGACACCTGGGGAATCCTTTCCAAACGTATTGAGCAATGACAGGGACACACCAGGATCTCTAGCTACAGGGCAGCCGCTGCCACACCCCATGAGGAGCAGGAGGATCCCAAAGGGGAAAGGTCCTGCCCATACCTTTCCCAAGGCCCTGGGAGGCTGCAGACGTCTGGCATGGTCTAGGCTGCTCAGGGCCCGGTTTGGGCCTCTCTGCCAAGGCTGTGGGGACAACAAGGGTAACGACTGAAGGGAGAGGCCCGGCCCAGGCAGGCATCACTGAGAGCAGAGAGCAGGCTGTGGGCGCACCTGTGTGGGTGCGCTGGGGCTGAGAAGCAGCCTTGGACCTGGGTCTGCTTTGTATGAGCCCCTCCCAGAGAAAGCCCAAAGTGGGAGCTGGAGACGGTTGCCTTCAGCACCCAACCAACACAGTTAATGCCTTCCTTGGCCAGAAGATTAAATATCAGAAAGCTGCTTTCCTGTGACCCTAAGCACAGAGGCCTCCTCATCCATAAACAAAGCTGCCCTCCTCTCTGGAGAGAAAGCAACACCTAAAAATAGCATAGGCATGGCACGGGCTGAGTAGACAGGGAAACGAGGCATTGGAGCAGCCTCAAATCAAGAAGCCAAGCTCTGTGTGTGCGTCTGCTCCTCTTCCTGTGTGTATGTGTGTGTGTATGTGAGTGTGGAGCCCTCTCTCCGTATGTGTCCGCCCAAAACAATCCCCATATGTTCCAAATGCCTGTCAGATTCTCCGTGTTCATTCATGCTGAATTTATCTTTGCCCTTTCCTGCCTTTTTTCCCATCTTAATCTTCTAGACCTGAATGCTGTTTTCAGGAACGGAGTCCCTACCTTCAACTATTCCAACATCTATTCACTCCAATCTCTAGGAAATGACTTTCAGAATCTTGCATGTCGATTTCTAATTTTCTGCCACCACTACGCCTTGAACTCCTCCAGGGCAAGGACTGTGTCTTATTCAGCTTTACATTTCCACTATGCTTAGCACAAAGTAGATGTTCATGAAATGCTTGATGAGTGATTGGATGGTTGAAGGAATGCATGAATGTATGGATAATTGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGACTGGATGGGTGGACGATTAGGTAGATGAGTGGATGGATGGATGGATGGGTGATAGGATAGATGGATAGATAATTGGAAGGATAGATGAATAAATAATTGGGTGGATAGATAGATGATGAATGATTGGATGGATGGATGGATGGATGATTGGATGGATGGATGGATGGATGGATGATTGGATGGATGGATGAATGGATGGATGGATGGATGGCTATATCTTTGCCCTTTCCTGCCTTTTTTTCCATATCTGGATGGATAGATAATTGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATATATCTTTGCCCTTTCCTGCCTTTTTTTCCATATCTGGATGGATGGATGGTTGGATGGATGGATGGATGGATGGATGGTTGGATGGATAGATGATTAGATGGATGGATGGATGGATGGATGGATGGATGGATGAACAGATGACTGGATGGATGGATGGATGGATAGATGGATGGATGGATGGATTGATGGATGAATGGATGAATGGATGGATAGATGGATGGATGATTGCATCATAATGCATGTAACTTCCGTTTCCCCAG
Seq C2 exon
GCATGACCTGCCAAGCCCGGAGCTCCTACATGGATACAGAGGTGCTCTGGGGCCACCGATTCACACCAGTCCTCACCTTGGAAAAGGGCTTCTATGAGGTGGACTACAACACCTTCCATGATACCTATGAGACCAACACACCCAGCTGCTGTGCCAAGGAGCTGGCAGAAATGAAGAGGGAAGGCCGGCTCCTCCAGTACCTCCCCAGCCCCCCACTGCTGGGGGGCTGTGCTGAGGCAGGGCTGGATGCAGAGGCTGAGCAGAATGAAGAAGATGAGCCCAAGGGGCTGGGTGGGTCCAGGGAGGCCAGGGGCTCGGTGTGAGGGGTGCAGCCTCCCTAAGACCTCCTGTCACTGGCTTCAGTGAACACAGACACTGCAGAGCCTGGGAGCAGGGGAGGGGAATAGTTGAGTGTGCTGTTTGGGGGCTCAGGAGCCATCAAGGCTGTGGGGAGGAACCATAAACCCAGCCCTCACAGCTCCCAGCACAGGGCCTCCCTGAGCCAGTGGCATCCTGCCTGGGCCCCCCATGGCAGTGCTGCCTCTTGTAGGTGCTGGCTAAGGGCCAGGCCAGGATGAGTTTCCCCATGGTGAATGTTACCGGATGGCATCTGTTCTCTCCATGCCCTGGGTCACTTCCTTTTTTGGGTCTCACAGACCCCTCCAGGGGCTGACACCTAGAGAGAACCATCACCTTGTCCCTCATTCCTTCCACCCTGAGGCTTGCTGTGGACTCAGAGAGGAGACTTACCTGATGAGAGCTCAAACCTCTAGTCTGGGATGAGCTCACAGAGCCCTCATGAGTTAAGATCCATCCATATCACATAGGCAATTCCTTTTAAATCAGATACCAACGACCCATTACTGAGAGGTACAGAGCGTACAGCCCTTGGTGTTCTCTGCTGTTATCTGCCAAATGTGTGTGTTTTTCCTCTGCTGTGTTCTGTGTGTCCAGTGTAGCCTATTGGAGAATCGGTCTCATTAGAGTGACTCTTAGAAGGTGGCCTGGGACTAGACAGCCCCTCTGAGCACATGCATAGTGGCATCAGCAGCTTCCTGGCCTACTCCCAATCACACTGTGCCCTGCACCTCCCACCAAGGGGGAACCCCAGCAGCTGGGGCTTTTCGAGTGCTTTTTGGCCCAAGAATCTCAGAGTGCTTCTAATCATCACAGTAGTTTTTGTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTTCACAATCTCAGCCAGCCTGCGGTGTGACCTGGGGAGAAAGTTGAGTGTCAGGGGACATGATGAGCCAGTTGGCCCTGAAACAGGAATGGGGCAAAGAGAAAGGAGAGCCAGGAGCATTTAAAAATCAGCATCTGGGCCAGGCAAGATGGCTCACGCCTGTGATCCCAGCATTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAACCCCGTCTCTACTGAAAATACAAAAAATTAGCCAGGCATGGTGGCAGGTGCCTGTAGTCCCAGCTACTCGGGAAGCTGAGGCAGAAGAATGGCATGAACCTGGGAGGTGGAGGTTGCAGTGAGCCAAGATCATGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCATCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120457-KCNJ5:NM_000890:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.280
Domain overlap (PFAM):
C1:
PF0100715=IRK=PU(77.5=82.7)
A:
NA
C2:
PF0100715=IRK=PD(22.2=68.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)