MmuINT0085607 @ mm9
Intron Retention
Gene
ENSMUSG00000032034 | Kcnj5
Description
potassium inwardly-rectifying channel, subfamily J, member 5 [Source:MGI Symbol;Acc:MGI:104755]
Coordinates
chr9:32122368-32130604:-
Coord C1 exon
chr9:32129666-32130604
Coord A exon
chr9:32125488-32129665
Coord C2 exon
chr9:32122368-32125487
Length
4178 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CATGGCTTCTGTTTCTCCAGGCA
3' ss Score
9.22
Exon sequences
Seq C1 exon
CTATGGCCGGTGATTCTAGGAATGCTATGAATCAAGACATGGAGATAGGAGTCACTTCCCAGGACCACAAGAAGATTCCCAAACAGGCTCGGGATTACATCCCCATTGCCACAGACCGCACCCGCCTGCTGACAGAAGGCAAGAAGCCACGCCAGCGCTACATGGAGAAGACTGGCAAGTGCAATGTACACCACGGCAATGTTCAGGAAACCTACCGCTACCTAAGTGACCTCTTCACCACCCTGGTGGACCTCAAATGGCGCTTCAACCTTCTGGTCTTCACCATGGTCTACACCATCACCTGGCTGTTCTTTGGCTTCATTTGGTGGCTCATTGCTTATGTCCGAGGTGATCTGGATCACGTGGGTGACCAAGAGTGGATCCCTTGTGTTGAAAACCTTAGCGGCTTTGTATCTGCTTTCCTGTTCTCCATCGAGACAGAAACAACCATTGGGTATGGCTTCAGAGTCATTACAGAGAAGTGTCCAGAAGGGATCATACTCCTTCTGGTGCAGGCCATTCTGGGCTCGATTGTTAATGCCTTCATGGTGGGGTGCATGTTTGTAAAGATCAGCCAGCCAAAGAAGAGAGCAGAGACCCTAATGTTTTCCAACAATGCCGTCATCTCCATGCGGGATGAGAAGCTGTGCCTCATGTTCCGGGTAGGGGACCTCCGAAACTCCCACATCGTGGAGGCCTCCATCCGTGCCAAGCTTATCAAGTCCCGGCAGACCAAAGAAGGAGAATTCATCCCCTTGAACCAGACCGACATTAATGTGGGCTTTGACACTGGTGACGACCGCCTCTTCCTGGTCTCCCCACTCATCATCTCCCACGAGATCAACGAGAAGAGCCCTTTTTGGGAGATGTCTCGTGCTCAACTGGAACAGGAAGAGTTCGAAGTTGTGGTCATACTAGAAGGAATGGTAGAAGCAACAG
Seq A exon
GTAAGACACTTGGCTCTCCTCAGCCGTGTGATCCGCTTCCTGCTCCGTGGAGCTTAGCCTGCTGGGGCTCTCTAGGGTGCAAGTTTGTGTGCAAGAATCCCAAGATGACAGTGAGGGCAGATCTATCCCTAATGTGATCCAAGGGGCAGTTACCCAAGATAGACCACCAGCTATAGCTACCATGGGCTGAACTCACCACCTTCTAGGCATGGTTCTAGATTTTAAACATATATTACAACAATGGGCCTCTAACACCTCCATAAAGGAGAATTCATGGTTTAGAAACAGAGACTCAGATGCGAGCAAGCACTGCCAAGCCAGGAGGGCTCCAGAACCAGCCCTCGTGTCCACTAGGTCAAAATGCTTCCTGTCCTAAGACATGCATGACGTGACATGGAAACCTGGGCTGAGTAAGCGAGGTGGCAGTGTTTCCTTAGCTTTGTACATCAGTGGTTCTCAACCGTCCTAATGCTACGATCCTTAAATGTAGTTTCCCATGTTTTGGCGATCCCCATCAATCATAATTTATTTTGTTGCTACTTTATAATTCATAATTTTGCTACTGTCATATATCATAGCGTAAATATCTGGTATTCAGGACATATGATATGCAAACCCTGTGATTCACACATTGAGAACCACTGCTATACATGTTGTGGGCCTCATCGTTAGGAGAGGATGGTTTTGCTCTCTGTTGCTGTGATAAAATAGTTTGACCTAAATCACCTTGGAAGAGGAGAAGGTTTGTTCTGTATTCGTCTTATAGGTCCATCATGGACAGAACTGTGAAGGCATACTGCTTACTGGCTTGCTCCCTCTTGCTTTCTCAACTTGCTTTCTTCTATAGCACAGGCCCACCTGTCTCAGGGGAGTATCACCTACAGAGGCCTTGAGCCTCCACGACAATCATTAAACAAAACAGTCCCCACCCCCACCCCCTCCCCCAACATTCTCACAGGCCAATCTGATGGCGGCAGTTGAGATTCCCTCTTCCCATGGGATTCTGGTTTGTGTTAAGATGACAAAGCTTAACCAGTTCAGATGGTACTCAGTATGTAGCCCTTGCAAAGTTCACACGTGTTCTCTCACAACCCTTATATTGAAGAGGACCTATGCCCAGATCTGTTGAGAGCACAGACACTACCCTCATGGTCAGCCCTCCTGCTTCTTGGGAGGGAAAGCACATCTGACAGATGCTGTATCCGTCCTCCTTTTCCTTCCTTCTCCTTATTTGACCACGTGGACTGAGCAGCATGCTCACGCTGAGTGCTGACCTGTTCAAAAGTCACCCGTGCTCGGAATAAGGCATCTGTTTCCAAACCTCACAAATAGCATTTATATGATTTTCATCCCCTTTCCCAAATACAAATACTGGATCTCAAAAGGGCTTGGCAGTCATTAAGTGTTCATACTCCGCTTTCCTTTACAAGTCTCCAGCTTTTTTTTTTTTTTTTAAACACACCACACTGGACCCTAAGATGCTAGAGGCTTGTTAAAGGTGGATAAGTGTAACTTGTCAGCCCTTGGGAATCTGGTTATGGGTGGGGGGGGGCTGGGGGGGGGGGACGACTAAGGCAGTACCTCCATAAGCCTTCCTAGTTTCAAGTCAGAGTCAGGCAGGGTGATAGCAGGCCCTAGGGACTATGCCAAAGGCTGCCTGGCCATCTGCTGGAGGGCCGGAGCCTAGCCAGGAAGCATATGGTAGCAGCTGGAGGAGCCCCTGGGGCTGAGGACAGTCAGGAAGCAGGAAGCTGATTCTTGTACATGGGGACTCTAGGGTCAGTGTGTCCTTGGTAACAGGGTCAGCATAGAACACAGGATCACTTTCTAGGGAAGGAGCTCCCCTGCAAGCTCCTGAAGAAGAGATCAGCCATAGACAGTCTCACGGACCCCTGGTGATGTGCTCCCTACCACCAGCTCTGCCCTAGGAGAGCACCCACAGACCACCCAGCAGAGGAAATAGATGCTGACCCTGTTTGCCTGCTCCTCCCACATTTCCCTGAAAGCCCTTTCCTATACCGCCCTGCCCTAACACCACCTGTGCCAGCTAATCTGTGTTCTCGGTCTGTGGAACCATGAGGGTGACTGAGACCACCTACTCACAAATGAGCTGAGCTGTTCCATTGTCAGGCTCATGGAACCCAGCCCTGGCATGAATTCAGGCAGAGTTTGAGCAGCATAGCTCTTCCCTACCCTTCCTATGTGAATCTGGACAACATGCTTGTCGTGTCTGCAAATGAAGAGGGTCATGTGCTGGTGGGAAGCTAGAGGATCAAATGGAGTAGCACAGATGAGACTCGGAGTTATTGAAAGGTAACAGTTGCAAGCAGCCAGGGTCTCTGGCTACAGGATAGCCCGTGCCATTTCCCTAAAAGACAAACAGAAAGAACAATGGGAAGAGTCCTGCGGGACCTCTGCAGGCACGCTTGTGGAAGTTCTGTGCTAGGGTCTTTTCAGAGTTCCGGAAGCCTGCAGGAACAGAGTGGGGTGTCTAGTCTGGTCAGTGTCCAGCTTTGGGTGTTTCTACCTTTGCTGGGCTCATGGGTATGCACCCAGGGTGAGGCCTGAATGGAGAGTCTTGAGTGGGGCAGGTAGCACTCTGAGAGCAAGGAGAGGGATGCTTTGGGGGACCAAGCTCAGATGAATGGGAAGTGCCTTTTGGCCTTGCTCTGGTTTGTATGGGACCTCTCCCAGAGAATTAGGAAGGACTAGCTTGTGCTTTTTAGATACTGAAGAAAACCTTCTCCAGGTCCCACCTAGCTCCTCTCCAGTTCCTGCCTTAGACAGAATGTGAAATAAAAATTTGTTTTTTGGTGACCCTAAGCACAGAGGCTTCCTCATCCATAAACAAAACATCCCTCCCTCTCTGGAGAGGAAGCAACACCTAAAAATAACCCAGCCGTGGCAGGGCTGCACAGAGAGGGACTGGAGGCATTAGAGCATCCTCAAATACAGAAGCCAGGCTGGGTGGTAGTTTGCTCCCTTTCCTGTGCATGTGTGCATTTGTTTGTGGATACATGTCCATGCATATGCTCATGAGTGTGCAGGCTTCTGGTATATGCCCAGCCAAACCTATTCCTCTGTATTGTGAATGCCTGCCAGCTTCTCTCTGGTTCCTCACCCTGAACTTACCTTGTTCAAATCCCGGTCCCGCCTCCTTTCCAGTCTCAGCCAGCTATTCCTAAATGGTGCTTTCAAAAACGATGTCCTTGTCTGCACGTATTTCCTCTCCCCCACCCTCTTTAGCATCCAGAAGCGTATTCTAGAATCTCACTTGTTCATTGGTCATTTTCTTCCCTCATAGTAGTTTGAGCTCCTCCACAGCAAAAAACCATCTCATACTCAGCTTCACCCTCCAGGTTCCTGACCCAAAGAAGAAGTTCGAGAGAGACTTGAAAAATTATTGGAGGAATTGATGACTGGATACATGGATAGTTGGAGGGATGAAGGATGTCTTAGCTACTTTTCTATTGCTGTGAAGGACACCATGACAACTTATAAAAGAAAGCATTTCATTGGGGGCTTGCTTACAGTTTCTACAGGGTTAGTCCATTTGTATCATGGCAGGAATCATGGCAGCAGTGGGCCAGCATAGTGCTATAGTGCTGAAGTAGTAGCTGAGAGCTTACATCTTATCTACAGGTATTAGGCAGAGAGAGAGAGAGAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAGATTGAGCCTGACATGGGCTTTTGAAACCTCACTTCCCAACCTCCTCCACCAGTAACATCTCCAACAAGGCCACACCTCCTAATCCTTCCTAAACAGTCTACTAGCTAGAAGCCAAATATTCAAATATATGAGCCTATGGTGGCTATTCTCATTCAAAACACCACAGAAGGATAGACAGAGAGATGATTTAACGGCCCAATATTGGTTTGATTGAGTGAATGGATGGAAGATAGTGAATACATAGTTACATGAATAGATGATGGATGGTGGAACAGGTGAATAGATGACTGGATGTATAGATGTATGTATAGGATGGGTAGGTGGGTGGGTGGATGGATGGATGGATGGATGGATGGATGGATGGATAGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATAGATGCTTCCTAATGTACATGGCTTCTGTTTCTCCAG
Seq C2 exon
GCATGACTTGCCAAGCACGGAGCTCTTACATGGATACAGAGGTGCTCTGGGGTCACCGATTCACACCAGTTCTCACCTTGGAAAAGGGCTTCTATGAGGTGGACTACAACACTTTCCATGACACCTATGAGACCAACACACCCAGTTGCTGTGCCAAGGAGCTGGCGGAGATGAAGCGGAGCGGTCGGCTCCTCCAGTACCTTCCCAGTCCTCCCTTGCTTGGGGGCTGTGCTGAGGCTGGGAACGAAGCTGAGGCCGAGAAGGATGAAGAGGGTGAGCCCAATGGACTGAGTGTGTCCCAGGCCACCAGGGGCTCAATGTGAAGTCTGTGTGCTACCCAGAGCCTCTTCTTGCCAGACACCGAGGAGCCTGGGAGGCCAGAGAGGCCAATTAGTTGAGCAAGCTTTGTGGGGCCCCAGGAGTATGGAAGCTCTACAGAGAGGAATAGTGTGTCAAGGCCTCACATCTCCTCCTTGGGGCCTCAGAGAAAGTAGCCTTGCCTAGGCCTCCTGACAAGTGCTTTCTAGGCCTCTGTGAGAGCATTAGTTGCCTCCAGAGTGGGGCTCCCAATGAGAGTTCTAGGGTGCCATCTATCCTCTGTCTGATTACTGGAGCCTGTTCACTTTCCTCCCCAATTCCTGGTCTCCTCAGCACAACACCTGAGACCTTCGGATCAAGGGAGGTAATTTTATCCATGGATACTCAGGCCTCCAGCTGGGGAGGCGTTCACAGAGGCCTTCCAGGGGCAATGCCTTTTAGTCTGAGGCCAAAACCCACTAATTAATAGCTTCTTAGCAAGGCCACTTGTTCACCTCTGATACTACTTAGCGTGTGTTTTCCTCATCTGTGTCGAGTAGACACTAACACTATGGCTTACAGGGTAATTGATTTCATTAGAGTGGCCTTAGGACACCAAGTACCTAGGAGCATACACCATGTCGTTCTCACTACTGCCTGACACCCTTAGTCATACTGTGCTCTGTGCTTCAAAGGAGAGCCCCCCAGCAGTTGTACCTTTTGTAAGACTATTTGGCCCAAGAACTTCAAAGAACCTGTGGAGTGGTCCTGGGGAACATATGAATTTCAAAGAGCCAGATGAGCCCTTTGGTACTAACACAGGGATGGCAGACAGGAGAGAGACACAAGGATAATTTTAAAATAAGATGATCTGGAGCCTGTAATCCTAGCGTTTGGCAGGCTGAGGCAGAATTTCGAATCTGAAGCCAGGCCAGTCTACACAGACCGCTCTCAAAAAAGCAAGAGACAAATAACAACCAAGAAAACATCTGCCGCAGTTGTTGCACGGGGGCTCCTTGGAGAAAAGTAGGCTATGAAACACAAGTGACAAGTGCCCATAAAGGCATCTTCAAGCTGAGCAGCCTTAGGCTGCTACTGAGATGCCTCTGGGCCTCCCTTCTGTGGAACAGCTCCAACATGGTGGTGGGACCTAGAGGGCGGGCCCTGAGGACAGGATGAGAGTTCGTGGGTGACTAGGGGGAGAAGAATCAAAGAGTGGAGAAGAGCTTTGGGGTCCACAGCCTCACAGATTTTTCTCTTCCAGTCTAGGTCTGAGGGTCAGGTCAGTGAAGCATTAGGTTGAAAACAATAAGCTGTCCTGGTCTTGGGAATTGGCTTACATGTTTCCTGACACCTCTACCCCAGTGTTTATGGCTCTCAACCAGCCTTTGAAAATAGAAGCACCTTCTTGCCAGGCCCTGGAGAACTTTCTCTGGCATCTATAGGGAGGCAAGAAGCTAAGGCAGCCTAGAGAATGGCTTCCCAACCTCAGGCCTTGTGCCCCTCAGACTGGGTGCCCGGGTCCCTGAGCTCGTAAGGAGATGGGGTCTGTGATGGATTGTTACACTGTGGATCCCTGCACTTGGCATCTGCACGAGTCTAGGCCAGTGGGTCTCAACCTTCCTAATGCTGTGACCCTTTAATCCAGTTCCTCGTGTTGTGATGACCTCACAACATTATAATAATCATAGCATTATTTTTGTTGCTACTTCATAGTTTTAATTTTTCTACTGTTATGAATTGTAATGTAGATATCCAAATTTGAAGGATATCTGATATGCAATCCCTGTGAAAGGGTTATCCAACTCCCAAAACGGTCTCAACCCACAGACCTACAGGTTAAGACTGGTCTAGGCAGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTGCATGTCTGTGAGTGTGGTATATGTGTGGATGTACGGGGTGGTGTGTATATGTATGTTCGTGTGTGTATATATGGTGTGAGGGTTGGTAAGTAGGTGTGGGATTGGGTGGAGATGGTGTGTATACTTAAGTGTGTGTGTGTGTGTTATATGATGAATATGGTGTTTGTGTACATGCGTGTGGCATGTATGATGTAGCATGTGTATGCTGTGGTGTGTATGTCTTTGTGTGTGATGGGAAAGGGAGTCCACAGTGATGAGGTAGGGGGTTATACATCTTCTATGTGGTGAAACAGGTCTAGTGGAGAATGGAAAATGAGCAGCCATCCCTACTCAGGAAAGAAAATCACCGAGCGGGTCCACAACACCCAATAGGTAAGCTGCAGGAGTCTAAGGATGGAGTCTGCTGATGAGACTAGAGGTCTAGGGTAACAGGAGATGCAGTCATTGTCACAAGAGACAGACACTCAGCCTGGCTTTCTAGACCCCAGGCTTAGGCAGGCAGGATCAGTTCTACTCCTTGGTAGGCCTGTCTTGATCAGAACTAGCTAGTGCCTACAGGTTAAGACCCTCAGTGAGTCAAGTTGGTAAAGATAAGAAATAGCAGGGAATGATGCTCTTATGGCCGGACAGTGGTCTGGCTCCTGTTTCACAATTGCCTTATTTGTATTTCTGAAACATCCCCCACTTGGCCAAGAGAGAACAGTGGTCTGTGTGAGTCAGGGCCACTGGTGTGTCAATGAGAAGCTGTGGAGGCTATCAAAGAAGTGGATGCACTCCTGAAGATACCCGAATGCCAACGCTGATATGTACTGGAGTTAGTAAGATAACAGACCCAATCAGGTTTCTATCGTGGTGACCTAAGTGTGAGGGGACTGCCCTTCCCATCCCAAGGACATCTCCATATCAATGAACAGTTGATGTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032034-Kcnj5:NM_010605:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.271
Domain overlap (PFAM):
C1:
PF0100715=IRK=PU(77.3=82.7)
A:
NA
C2:
PF0100715=IRK=PD(22.4=69.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: