BtaINT0079675 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006902 | KCNJ5
Description
potassium channel, inwardly rectifying subfamily J, member 5 [Source:HGNC Symbol;Acc:HGNC:6266]
Coordinates
chr29:32825274-32829939:+
Coord C1 exon
chr29:32825274-32826226
Coord A exon
chr29:32826227-32829634
Coord C2 exon
chr29:32829635-32829939
Length
3408 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGTGCCCTCTGTGCACCCAGGCA
3' ss Score
8.71
Exon sequences
Seq C1 exon
TCAATGCATCCCAGTCATGGCTGGCGATTCTAGGAATGCCATGAACCAGGATATGGAGATTGGGGTCACTCCCAGGGACCCTAAGAAGATTCCCAAACAGGCCCGAGATTACATCCCCATTGCCACCGACCGCACGCGCCTCCTGTCAGAGGGCAAGAAGCCGAGGCAGCGCTACATGGAGAAGAGCGGCAAGTGCAACGTCCATCACGGCAACGTCCAGGAGACCTACCGCTACCTGAGCGACCTCTTCACCACCCTGGTGGACCTCAAGTGGCGCTTCAACCTGCTTGTCTTCACCATGGTCTACACCATCACCTGGCTGTTCTTCGGGTTCATCTGGTGGCTCATTGCTTACATCCGGGGTGACCTGGACCATGTCGGGGACCGGGAGTGGATCCCTTGTGTAGAGAACCTCAGCGGCTTCGTGTCTGCCTTCCTGTTCTCCATCGAGACGGAGACCACCATCGGGTACGGCTTTCGGGTGATCACGGAGAAGTGTCCGGAGGGCATCGTCCTCCTGCTGGTCCAGGCCATCCTCGGCTCCATCGTCAACGCCTTCATGGTGGGGTGCATGTTCGTCAAGATCAGCCAGCCCAAGAAGAGAGCTGAGACCCTCATGTTTTCCAACAACGCTGTCATCTCACTTCGAGACGAGAAGCTCTGTCTCATGTTCCGGGTGGGCGACCTCCGCAACTCGCACATTGTGGAGGCCTCCATCCGCGCCAAGCTCATCAAGTCCCGGCAGACCAAGGAGGGCGAGTTCATCCCCCTGAACCAGACCGACATCAACGTGGGCTTCGACACGGGGGACGACCGCCTCTTCCTGGTTTCCCCGCTCATCATCTGTCACGAGATCAATGAGAAGAGCCCTTTCTGGGAGATGTCGCGGGCCCAGTTGACCCAGGAGGAGTTCGAGGTCGTGGTCATCCTGGAAGGGATGGTGGAGGCCACAG
Seq A exon
GTGAGCCTCCCCAGCTCCTTCTCCTCCCCAGCCCCTCCCCATCCCCTCCCCAGCCCTGGTGATCAGACCCCTGCTGATTCCAGAAGGTGCAGCCTGAAGGCGGCAGCTCAATCAGCCCCACCCCCCAAATGGTGATCTTCAGGATGGAATTACGAGAGCAGATAATGTGTGTCGGGACTTCCTGGTGGCTCCATGGCAAAGAACCCAATCCAGTGCAGGAGATGTGGGTTTGATCCCTGGGTTGGGAAGATCCCCTGGAAAAGGAAATGACAACCCATTCCAGTATTCTTGCCTGAAAAATCCCATGGACAGAGGAGCCTGGTGGTTTACAGTCCATGGGGTTGCAAAGAATCAGACACAACCAAGCGTGCGTGCACACACACACACACACACAAAATGTGTGTTGAACCCCCTCCCCCCCAATGTCTGGGCATGGTCTAGACTCTAAGTGCACAGTAACTCATTGAGTGAGATGGTTTTCCTTCAGGTACAGGTGTAGAAACAGAGACAGAGGTAAGCGCTCCTAAGTCACTGAACCAGGATGCAGGCCAAAGCCAGGTGACCCAAAGCCTGGTTTCCAACAGGCTACACCACCTGTCCTTCCCTACCCAAAGGTGTCACCCAAAGGGGGTTCTGTGAGCACATGACTTTGAGAAACTGAGTTGAACAAAGGTGAACAGGCTTCTTACAGGAGGATGTGCAGGTCTTTACATGTGAATCGCCACCTGAGGCAAGGACAGGGTGAGTCCCAAAGTCACAGAATCCTCTTCTGGGAGAGACTCCCAAGTCCCACACCCTTAGGCCCCTATGGGGCAGGCTGTCCCTCAGCTTCCCTGTGGAAGTGGCTCTGTGAACACGGGTGTGTGCAAAAGACAGTGCATCACACTCACACGTGTCTGGCCAGCACCTCCCTGCCCAGCGACTGACTCATGGCAGCTGAGCACTTCCCGCCTCCCAGCTCTGTGTGGGGCTCAGGGAAGCCAAGGCCTGGGGGAGCCCATATCCCCACCACACTCCCTGGGCAAGGGAGCCCCACTAACTGTGGGCCCTCCTCTGCTTCCCCCTTCTTCCTGCCCTCCTTTCTCACTCACAGAGGCATCTGAGCACCTGGCCTGGCCCTAAGGATGACTCATAGAAAACTCACTGGAGCTGAGAATATATATGTTTTTCTAATCTGGCAACAGCACTGGAGGGCTGGCTTCGACCCTGTTTCACAGATGTGGAAGCTTCTTCATGCAGACAGGAGGGTCTATTGTATTTGGGGCTGTCACTCAGGCATCTAGAGTTTGTCAGCCACACCACACTGCCCCCTATAAGGTTGGGGGCCTTGCGTAAAGGTGGCCAAACAAGCCTTCCTGGCCTCTCGGGGGGCTGGGTGGGCAGCTCAGATGGGGCAGCCACAGACAGACCTTCCTGAGTGGAGCAAAACCTCTGGGGTGTGAACAGGCTCCAGGGACCCAGGCAAGGGGAGCTGCTCAACCATCTGCCGGGGACCCAGGCTGGCCAGGCGGCATATGGTGGCAGCCGGGGAACCCCTGGGACAGGACGGGGGGTGGACTCTCCTCCCACCGCTGGGAGCTTGCAGGTCACGCCATCCTTGGAGCCAGGGTCAGACCAGAACATGGGCTGAGATTCTGGAAAAGAGCTCCATTGCGAGGCCACAAAGGTCAGCTCGGGAATGTGGGGAAGGTAGGAAAGCAGTGCCTTACCATGCTTCTCCTCTCCGCCGGCCCGTCACTGCCACTCACTGACCTCTCCCAGCGTGGCTCCTCAGAGTCAGGTCCCTCGGTTGACCTGCCCTATCTGGTTGCCCTCCTCTCTTCCCATGGCCTGGGTTACTCTAGTTCTGCAGGGAGGAAAGAGAGGGAGACTGCCACCCACATGGGCTCTGATCTCAGCCACTTTAGGAGCTTGGTTGCCACATTCATGGAACCAAGCACAGGCTATGCGTTCAGGCCGAGGTTTGACCGGCGCAGCTCTGTGCAGCCTGCACGTGTGAGTTTGGGCAGGTTGCTCAACTCAACAGCAGGATGAAGATAACAAACCTCAGAGGCTCACAAGGGAAGGGGTTAAATGATGAAACGGAGGGGTGTATGTGAAGCACAATGCCTGCCACCCAGAGCGGCTTCTGTCCTTTCCAAATGCATTGCAAGCTGACTGCCAGGCACACTGGTGGGTTTCCAGTCATAGAACAGCCCCCTTCTAAGAGGTGGGATGGAAGAAGGGCAGGAAGACCCCAGGGGGCTTGGTCCAAAGCGCCCACAGAGTCCAGTCTCGCTGTGTTTCCTGAATTCCTCAAGCCTGCAGATCTTTGGCTTGTGTCTGCACTGGTCAGTGCCCAGCATCGGTTTCTACACCTCTGCTGAGCTGGGGGTTGTCCAAGGACCGAGGGAAGACATCTGGAGCAGGCGGGACCCCGCGAGCCAAGAGCACGTGGGGTCCACTGGGGTTACCTGGCGGTCTGTGGGTCTGGGGTGCATGAGACCCCTGCCAGAGAACACTTAAACTGGGGAGAGGGGGTGCTGAGCAGACATTTCCTTCAGTTTTCAAAGAGCACAAGCCAGGACCTTCCTCAGCCGAAAGATTAAATATCAGAAAACTGCTTCCCTGTGACCCTGAGGACAGAGGCGTCCTCATCCATAAACAAAGCTGTCCTCTCTGGAGAGAAAGCAGCACCTAAAAATAACATAGGCAAGCCAGGGCTGAGCCGACAGGGAATGGGGGCATTGGAGCATGCTCCAACCAAGGAGCCATGCTGTGTGTGTGTGTGTGTGCACACATCCGTGGGGGGCGGTGTGTGTACACACGTGTAGGCTTTTGCCCGTATGGATCCACCCCAAACCCCGTGTATTCTAAATGCCTGTCAGCTTCTCTGGGTTGAGCCACTCTGAATTTATCTTTGTTCAAACTTTCCTCATCTTTTCTTATCTCGGTCTTCTAGAACTTAATGCATGTTCAGGAACCATGTCCATTCCTGAATTATTCACTCCCGTCTCTAGGAACCTACTCCACAATCTTGCATTGTTAATTTCTAATTTTCTGCCTCCATCAGACCTTGAGCTCTTTAGGGCAAGAGTTGTATCTTATTCAGCTTTACGTCTCCATGGTGCTTAGCACAAAGCTAAGATTCAACATATGCTTGATGAATGATTGGGTGGATAATTGGGTGGGTGGATTGATGGATCAGTGATGAATGAATGGATGGGTGGATGAATGGATGGATGATGAAAGATGATGAATGGATGGATGGTTGGATGAATGGATAGATGATGGATAGATGCACAGATGGACAGATGGATGAAAGATGTTGAATGGATGGATAGAAGGATGATGAATGATGGGCTGATGGATGGATAATGGATGGAAGGCTGTGGCCACTCCTAATACATGTGCCCTCTGTGCACCCAG
Seq C2 exon
GCATGACTTGCCAAGCACGGAGCTCCTACATGGATACCGAGGTGCTCTGGGGCCACCGGTTCACACCAGTCCTCACCTTGGAAAAGGGCTTCTATGAGGTGGACTACAACACCTTCCACGACACCTATGAAACCAACACGCCCAGCTGCTGTGCCAAGGAACTGGCAGAAATGAAGCGGGAAGGCCGGCTCCTGCAGTACCACCCCAGCCCCCCACTGCCAGGGGGTTGCGTTGGAGCAGAGCTGGGTGCAGAGGCGGAGCAGGAAGGAGAGGAAGAGCCTGAGGGTCTGAGTGGGTCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006902:ENSBTAT00000009059:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.314
Domain overlap (PFAM):
C1:
PF0100715=IRK=PU(78.0=81.2)
A:
NA
C2:
PF0100715=IRK=PD(21.7=70.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]