HsaINT0084480 @ hg19
Intron Retention
Gene
ENSG00000162728 | KCNJ9
Description
potassium inwardly-rectifying channel, subfamily J, member 9 [Source:HGNC Symbol;Acc:6270]
Coordinates
chr1:160053707-160059212:+
Coord C1 exon
chr1:160053707-160054670
Coord A exon
chr1:160054671-160057275
Coord C2 exon
chr1:160057276-160059212
Length
2605 bp
Sequences
Splice sites
5' ss Seq
CGGGTGCGA
5' ss Score
5.11
3' ss Seq
ACCGGTGCCCCTCCTCCCAGGAA
3' ss Score
9.86
Exon sequences
Seq C1 exon
CCCCTCCAGGACCCCCGACGCCGCCTAGGCGCCCAGCGACGCGCGGCAGGTGGCAGCAGCTCGGGCCCCCGCCGCACTCCAGGCGCCCGCAGCGCTCGCCCTGACGCGGCCGCCATGGCGCAGGAGAACGCGGCCTTCTCGCCCGGGCAGGAGGAGCCGCCGCGGCGCCGCGGCCGCCAGCGCTACGTGGAGAAGGATGGCCGGTGCAACGTGCAGCAGGGCAACGTGCGCGAGACATACCGCTACCTGACGGACCTGTTCACCACGCTGGTGGACCTGCAGTGGCGCCTCAGCCTGTTGTTCTTCGTCCTGGCCTACGCGCTCACCTGGCTCTTCTTCGGCGCCATCTGGTGGCTGATCGCCTACGGCCGCGGCGACCTGGAGCACCTGGAGGACACCGCGTGGACGCCGTGCGTCAACAACCTCAACGGCTTCGTGGCCGCCTTCCTCTTCTCCATCGAGACCGAGACCACCATCGGCTACGGGCACCGCGTCATCACCGACCAGTGCCCCGAGGGCATCGTGCTGCTGCTGCTGCAGGCCATCCTGGGCTCCATGGTGAACGCCTTCATGGTGGGCTGCATGTTCGTCAAGATCTCGCAGCCCAACAAGCGCGCAGCCACGCTCGTCTTCTCCTCGCACGCCGTGGTGTCGCTGCGCGACGGGCGCCTCTGCCTCATGTTCCGCGTGGGCGACTTGCGCTCCTCACACATAGTGGAGGCCTCCATCCGCGCCAAGCTCATCCGCTCGCGCCAGACGCTGGAGGGCGAGTTCATCCCGCTGCACCAGACCGACCTCAGCGTGGGCTTCGACACGGGAGACGACCGCCTCTTCCTCGTCTCGCCGCTGGTTATCAGCCACGAGATCGACGCCGCCAGCCCCTTCTGGGAGGCGTCGCGCCGTGCCCTCGAGAGGGACGACTTCGAGATCGTCGTTATCCTCGAGGGCATGGTGGAAGCCACGG
Seq A exon
GTGCGAGCAGGCCTGGGGAGGGGAGCGGGGTTGGCAGAGGGTGGGCGGGACCGAGGAAGGCAGGGGCGAGACTAGGGGCCAGGGGAGCTGGGGAGGATGGATGGAGGGGCTGGTGGAGGATGAGACAGTGAGGTGAGACAGGGGTCGGAGGCGGGAGTGGAACCGAGCAACGCCGCAGAAGGCCAAGAGAAAGCTTGGAGGAATTCTCCGAAATGGCACTGGCGTGGGGCCCTGGGCCCAGAGGAATGTGTCACTTGGAATAGGGACAGTAATAATAGCTAGTGCTCGCCCAGTATTCACCCTGTGTCATGCGCAGTTCCAAAGCACTTTCTACCTCTGAGTCGATTTAATCCTAACAAGAACCCTCTGAAGGTAACTTCTTGTTATTGTGCTCACTTTTTAGAGATGAGATTGCTCCAATGAGAAATTAAGGAAGTTGTCCACTTTCCTAAGCCAATAAGTGGCCATGCCTGGATTGGACACAGGCAATGTGGCTTCAATGTTTAGTGGTCCCGAGTTGGAAGGAGGGGTTAGGTTCAGGGGTTTTCTCACTGCAGTCAGGTTCAGGCCCCTGGAATTTGACGGTGAAGGTTTTCCATTGCCTGAGTTATTTCTAGGCCGGATCTTGAGGGGAGTTTAATACCTAGTCTCACTTGTACCTCGGTTTCCCAATTCATCCATTTCCACTGACAAGGGATATAGATGATGTTACCTTTTCTAGCTCTTTTCCAAAAGGAACTGGCAACTCATCTGTGATGTCAATAAGTCCAACCCAGACCTACACAGTGAAGGCTTTGGGAGCAGGTGAAAAAAGACCAGTGTTACAGGAGTCGCAAAGGAGGTCACTTAGGACTTGAGATCTAGAGGATAGATGAGGATGAGGAAACTGCGGGTGGAGGACCAAAGGCCCACTAGGGGGCGCCGCAGTCCCTCCTCTGACGCCAGAGCTGCTGATGCTCCCTGCCGGCTTCGCTGACAAGCTGGTGCCTTCAGATCCTTTCCCTGGCCCCTTTAGGCTGAGACTCCGCTTCACACCCCAACCCCAGCTCCGCATCACTGTTCCCATTCCTGCTTCACCCCGACTCTTTCCTCTTCCCCCACTCACCCCGTTCCCTTTCCTCTCTCTCCAGCTGTCACTCCTTTTCTGCCAGTATCTCAGGCAGGCCCCTCACCCTCCAGGGAAGTTGCTGCCCGGCCCTCTTTTCTCTTTGTACCCCCAGCCCTGCCCTCTCCTCCTCGAAGCCCTTCTCTCCCCAGTGTCCCTTATGCCTCTTTCTCTTCTCTCCCACTGGATACTTTCTATTCCAACTTCACCGAGGAATACCAATGTCTCAGCGCCAGGCTTTCCGAGTTGACAGCCACTCTCCGGTTAGCTAATGTTCACTCTTCTGTTTCCCCTTGTTCCGAGATGGATATGGGTTGGGGGCAAGACCCTGTGGCAGAAAGGAGAATGACCTGCCCTGAGGGGTGCACCAGCCCAACAGGAAGATAGGACACAAGCCCCGGGCAGGGAGGACCAGGACAGAGGAGATGAGGATAGGAATCTGTCTGTTTTTCTAGAGAGATAAAGCTGGAAAGGATGGTAATATTTTGGGTGAGACAGTCAGGATTCAAAACGCTTTTGAAAAGCAAGAATAATGAGCCAAAACCCAGCAAGATGACATTTAAAATGAATAAATATAAAATTCTACATTTAGGCTTTAAAAAAATCACTTATGTAAGCACAGCATGGAAGAGCACTGGTGAAAAAAGAACTGGGAGTTTTAGTTGGCTACAGTCTTGATGTCGTAGCAATGTGATGCAGCCTCCAAAATGATTATGTAATGTTATCCTGGGCCCTATTAGTGAAAGCATCATGGCCAGAAGAGAGAGATGGTGCGCGCTCTCTTATGCACGGAGCAGGCCACAGTTGGAAAATTTACTATACTCAAAATGCTTAAAGGGCCCTCCTTGGCCATTCTGGCTTGTAATCAAAAAAGTAGAGTTCTGGAAAACCAGGTCAAATGAGGAATCGTGGAGGAAGCCAGGGATGTTAAGTCAAGAGAGAAAACATGAGGGAATCTGAGACTCCTGTTTTCAGATACTCAGAGGACTGTGAAGTGGGAGGGGAATGAAGCCAAGAGTTGGAAATCCCAGGGTACAGGTTTTAGCTCTGTATAAAGAACAACCCAACTATTAGAGCTATCATACAAAGGAGTGGGCCCTTTATGAAGTGGTGAGCTATCAATCCTGGGAGGTAATCAAGTATAAGCTAGATGCCCATTGTTAGAAATGCTCCTTTGGGGAGCCCTGTATGGAGTGAGAAGTTGGACTAGAGGATCCCTAAGGTTAGTTTCAAGGTTAAGCTTTTTTTGGTTGGCATCACCAAATGACAGGAGGGGAAAAAAGAGCTGGACATTAAGAGGAGTTGGGGCAAATGGAGAAGACACGAGGGAGCTGGGTAAGAACAGGAGCTAGGGAGGGGGGGAAATGGACTGGACCAAAGGGAGGTGGGAGCCCTTAGGAAGGAATAGAAGGGAGGGTGCTGGGAGTAGGGTTGTGGAATGAGAAGAGGAGAGGGAAGCCTGGAGCTGAGATTCCCCCTGACCGGTGCCCCTCCTCCCAG
Seq C2 exon
GAATGACATGCCAAGCTCGGAGCTCCTACCTGGTAGACGAGGTGCTGTGGGGCCACCGCTTCACGTCAGTGCTGACTCTGGAGGACGGCTTCTACGAAGTGGACTATGCCAGCTTTCACGAGACTTTTGAGGTGCCCACACCTTCGTGCAGTGCTCGAGAGCTGGCAGAGGCTGCCGCCCGCCTTGATGCCCATCTCTACTGGTCCATCCCCAGCCGGCTGGATGAGAAGGTGGAGGAGGAGGGGGCGGGGGAGGGGGCGGGTGGGGAAGCTGGGGCTGACAAGGAGCAGAATGGCTGCCTGCCACCCCCAGAGAGTGAGTCCAAGGTGTGACCAGCTTCCTCCAGACCCCTGTGGCAGACCGGGGGCCAGACACAGATACATGGGGAACTGCATATCGGAGGTGGTGGAGGAGGAGGAGGAGGAGGAAGGCAAAGCCCCTGGAAATGTGCTAAAGTTGGAAAGTCCCCGTCCCCCAGAACCTCAAGTCTAGAAACCAGTATGGAAGGGAGGGGTCCTGATTTCAGGGAAATGGAGGGTGGGGCCGGGTGAAAATGCCAGTCTGTGTTTGACCTTCACATTTGTTCATGAGTGGATGGATGGACAGAATGATGGACTTTTGGGGGTTGGATGGGAAGATGGTAGCAGATAAAGACAGCTGACAGATACATAGATGGACCAGTAGACAACTGGTCCACTCAGGGCTGCCACTAACCTGTAGAACACCCCTGTGCAAATTTTAAAAAGGAACCCTTTTCCTCCAGACAGATACAGCCCCAAACCAGGGTGCATGGCTTGGGGAGCAGAGTATAGGATGGATTGCAGTCCCCAGTCACCTCTTCTGCCAGCCTCCCCACATATGGCACAACTGTCTAATGACACGGTAGGCCAAGCTGAAGTGAAGGAGAAAGGAGCCGGACCAAGATGGGCACATGAGGAGGGTGCCCTCCTAGCTCCACCCTCACCAGGATGAAGGCGTGCAAGGGGCTCAGCAAGGTGTGAATGACCTTAGTCCGCAAGTTCAGGGAAGCAGGCAGAGCGGGGAGGTGCCTGAGCTGGGGCCTGGAGAGGGGCCTGGGAAAGGAAAACCAGGGATAGCTATTTTCTTACAGTGGAGTGAGATCTTACAGGTATCAGGCACAGGCAGGAAGAGAGAGAGAGAGGTTCTGGGGAGGAAGGGCCAGGAGAGAGATCTAGAAAGTGGGTTCACTAGAGCTGGGAAACAGGGAGCCCCTAGGAAAGCAGTGTGTCCTTGGGGCACAGTCATTCACATCACTGATTGGGTGCCATGTGGAGTGGACATTCAAAAACCTGGTTCCTGTCCTCAAAATAAGGGGCACCTGGGAAAACAGAGGAATCTACCTGTGGTGACTGAACGAGGGATAATTCAAACTGACAACCTGTGCAGTCCCGTGGAGGGTAGGGGAGTGTGGGTGATCAGAAGGCTGGGGCCAGTGTAAGGCATAGGGAATATGTAAGTCAGGAGTTAGAAATCTCCAGTGTGCGTTGGAATCACCTGGAGGGCTTGGTAAAACACAGATTTTTGGGCTCCACTCCAAGGGTTTCTGACCCAAGAGGTGGGGACCAAAACCATGCATTCCTAAGAAGTCCCCAGGTCATGCTGCTGTTGCTGGACTGAGGACCACACTTTGAGAACCTGTGCTCTAAGTGAATACTTGGAAGTCGTTTCAGGACATGGGGCATAGAAACTGAGGAGTAGCTGAGAGGAAGATGAAGAGAAGCTGAGAAGAAGCTGAGGATCCTCACAGGAGCAGACAGAGAAATGTGAAGGGTGGGGTTTTATGTGTGGGAAAGGGACCCGAAGCCCAGGCTGAAGAGTTTAACTTTGGGCCCAGAAACTCAACCATCAATGGAAACAGGGCAGTGACAAGTGGAGGGGGTGTCTGGAAGCTGAGCAGGCCCGACAGAGAGATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162728-KCNJ9:NM_004983:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.300
Domain overlap (PFAM):
C1:
PF0100715=IRK=PU(76.9=91.2)
A:
NA
C2:
PF0100715=IRK=PD(22.8=69.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)