MmuINT0085615 @ mm10
Intron Retention
Gene
ENSMUSG00000038026 | Kcnj9
Description
potassium inwardly-rectifying channel, subfamily J, member 9 [Source:MGI Symbol;Acc:MGI:108007]
Coordinates
chr1:172320501-172326583:-
Coord C1 exon
chr1:172325706-172326583
Coord A exon
chr1:172323195-172325705
Coord C2 exon
chr1:172320501-172323194
Length
2511 bp
Sequences
Splice sites
5' ss Seq
CGGGTGCGG
5' ss Score
6.49
3' ss Seq
CTCCTCCCCCCACCCCCCAGGAA
3' ss Score
10.13
Exon sequences
Seq C1 exon
ACCCCGCAGGATCCCCGCTGCGGCCGCCATGGCGCAGGAGAACGCCGCTTTCTCTCCCGGGTCGGAGGAGCCGCCACGCCGCCGCGGTCGCCAGCGCTACGTGGAGAAGGACGGTCGCTGTAACGTGCAGCAGGGCAACGTCCGCGAGACCTACCGCTACCTGACCGACCTGTTCACCACGCTGGTGGACCTGCAGTGGCGCCTCAGCCTGCTCTTCTTCGTGCTCGCCTACGCGCTCACTTGGCTCTTCTTCGGCGCCATCTGGTGGCTCATCGCCTACGGCCGCGGCGACCTGGAACACCTGGAGGACACCGCGTGGACCCCGTGCGTCAACAACCTCAACGGCTTCGTGGCCGCCTTCCTCTTCTCCATCGAGACGGAGACCACCATCGGCTATGGGCACCGGGTCATCACCGACCAGTGTCCCGAGGGCATCGTGCTGCTGCTGCTGCAGGCTATCCTGGGCTCCATGGTGAACGCTTTCATGGTGGGCTGCATGTTCGTCAAGATCTCGCAGCCCAACAAGCGCGCCGCCACTCTCGTCTTCTCCTCGCACGCCGTGGTGTCTCTGCGCGACGGGCGCCTCTGTCTCATGTTTCGCGTGGGCGACCTGCGATCCTCGCACATCGTCGAGGCCTCCATCCGCGCCAAGCTCATCCGCTCCCGTCAGACGCTCGAGGGCGAGTTCATCCCTTTGCACCAGACCGACCTCAGCGTGGGCTTTGACACGGGGGACGACCGCCTCTTTCTCGTCTCACCTCTCGTCATCAGCCACGAAATCGATGCCGCCAGCCCCTTCTGGGAGGCATCGCGCCGCGCCCTCGAGAGGGACGACTTCGAGATCGTAGTCATTCTCGAGGGCATGGTGGAGGCCACGG
Seq A exon
GTGCGGGCAGGCTGGAGGATGGGAGCAGGGATGCAGGACAAGGGCAAGAAAAGCAGCCAGGGGAGGCGCAGAAAGATGGACAGAGAATGGAGTGTAGGGTGACAGGCCTGAGGGGTAGCGGGGGCCGGGGAGAGGACGGGAGATGACAGGGATGGACAGGGTGACTTTGCAGAGTCAAGAAAAGCTTGGAAGAGGTCTATGAAATGGCACTAGCTTGAGGCCCTGGCCTGACAGCTATGTCACTTTGAACTACATTTTACATCTCTGAATTCATTTAAGTCCAGCAAAGCTCCCCTGGAGGTTACTTTTGACTGTGCTCGGTTTTCAGAGAATGAGTAGCCCCAAAGAAAGGTCCCATAAATAGCCCGCTGTCACAAGCCAATAAATAGCACAGCCTGGGTTGAACATAGGACATCTATCTTCAGTGTTTCCTGGTACAGTGTTGGGATGAAGGTTAAGTGCAGGGTTCTTGAAGCCCAGAGGTCCATAGCTCTGGAATTTAACTGACCTAAGTTATTCCCAAGGAATAACTTAGGGGTAGGGAGGGATAACTGGTCTCCCTTCTGTCCCCGTTACCCCGTCTGCCACTCTTAACTTCCCCTGGTGTTGCCATTTCTAGCCCCTTTCCAGAAGGAACGGTGACATCAGTACTTTCACTCAGGCCTACACTGTCAAGAGCTTGGGGGCAGGTAGGAAAAAGACTAGTAGTACTGGAGCAAAAACAGGTCCTTGAAGAGGTCCTAGCCGTCAGGGAGCATAAGGAAGACGCAGGTGAACCAAGAGGCCACTAGGAGGAGCTGCGGAGCTGCTACGGACAGGCTAGCTCCCTGCTGCTAGCCTTGAAACCTGGCTCCTGGGCCTAGACAAAAACATCATCTTCTCCATGGCCACCTCAGGTCTTCCCACTCCCCTCTCCTCCTTCACTCCAACTAGGCTGGTTCTAGCCCATGCCCATTCCGCACTGCTCCCTCTGTCTCTGCGCTGTCCCTCTCTCTGACACAATCTCGGACAGGTTTCTATCAGGGACTTTTTCATCTGCCTTCTCTTCCCCCTCTGCCTCTGCCTCCACTTTGCACCTATCCCTACTCCCCCAAGCCCTACCTCTGCTTCTCAGGCCTTCTCCCTGCAGAGGCCCCGGTGGCCTCTCCTTCCCTACCCTCCCTGATACATCTTATTCCAGCTTTGCCAAAGAATACCAATGACCCCAAGATGTCTCAGGGCCAGACTTCCAATGTCAGAGCCGGTCTCTGATTAGTGAATGCTTACTCCTCTGTTTCTGAGATGGATTCCGGTTGGGGAAGATTCTGAGGTAGGAACAAAATGATCTGCCCCGAGGGGAGGGTGCACAAACCCAATAGAGAAGACAGGACACAGGCCCAGGGCAAGAACTGGGAAGGGGCAGTGTAAAGGACATGGGGATGGGAGCTTGCTTGACTTTTCTAGAGATAAGGCTGGGAAGGATGGTAGTATTTTGGGATTCAAACTGCTTTTGAAAAGCAAGAATAATGAGCCAAAACCCAACATGATGACATTTAAGGGGAATAAATATAAAATTCTACATTTAGGCTTTAAAAAAATCACTTATGTAAGCACAGCATGGAAAGGCTCCGGTGGAGAAAGAACTGGGGGTTTTAGTTGGCCACTGGCTTTGCTGCAGCAACGTGATGCAGCTTCCAAAGGCGTTTATGTAATGTAATCACGGGCCCGCTTCACCAAAGCATCTGGGCGAGAAGCAAGAGATAGTAAGCCTTCTTTTATGCACAGATAAGGCCACAGTTGAAAAAGCACTTCAGATGAGCCCTTACCTGGGCCTGGTGGCCATTCTGATTTGCAATGAAGATTGTAAGCTTTGGGGGAGTCAGATGAAGTAAGAAATGGCCATGAGTGTTCAATCTGAGGAAGAGAAGATGTAAGGGAACCCCATATTTACACTCAAGGGGGTGTCAGGTGGTAAGGGAATGGAACCAGGGACCACGGGTCCTAGGAGACAGAGTTTAGTTTATGTAAGAGAAAACCCAGAGCCAAAGAGATGTCTCAGCTTGCCACCACGCCTGACTACTGACCTGAGTTGAATTACCAGGTCTCACATTGGGGAGTCAACTGTCTCCCCAAGTTGTCCTCTGACCTCCACATACATACATATGCACGCATATAGACACATAAATGTAAAACACATTTGTAAAGACGATTGGCACGTTGCACAAAGGACTGGACTTTTAATGAGATGGTGAGCTTTCAATCCTGGGGTGTAATCAGTTCAGCCCATTGTCTGGGAATGCTTGGGGGTGGGTAGAGGCGGCTCTGTGGGAAACAGGAAGGTTAGGCTTAAGGTTAAGCTTCTCAATGGAGAGTAGGGGAAAACATAGGCTGGCAGATAGAGAAGAGGGCTAACTAAAAAGAGAGGTGGGACTCTCAGAGAGAGAAGAGGGTTGTGGGATGACAGACAGGAGAAGGAATCCTCTGGCAGGGGCCCCTTTGACTGATGCCGCTTCTCCTCCCCCCACCCCCCAG
Seq C2 exon
GAATGACGTGCCAAGCTCGAAGCTCGTACCTGGTGGATGAAGTGTTGTGGGGCCACCGGTTCACATCGGTGCTCACCCTGGAGGATGGTTTCTATGAGGTGGACTACGCCAGCTTCCACGAAACCTTTGAGGTGCCCACACCCTCGTGCAGTGCTCGGGAACTGGCAGAAGCCGCGGCCCGCCTCGATGCCCATCTCTACTGGTCCATCCCCAGCAGGCTGGATGAGAAGGTGGAGGAAGAAGGGGCTGGGGAGGGGGCAGGTGCGGGAGATGGAGCTGACAAGGAGCACAATGGCTGCCTGCCACCCCCAGAGAGTGAGTCCAAGGTGTGACTGGTTTCCTCCCACCCCCTGTGGCAGACCAGGGGGCCGGACTCAGGTACACAGAAGCTGCGAGTGGAGGTGGAAGAAGAGGAGGCAGGCAGTGTCCCGAGGAACAGCTAAAGTTGGGAGAGGCCCGCTGAGTCCAGGATCGAGTAGGGAAGGCTGAGGTCCTGGTTTGAAGAGAGAGGGTTGCAGGGCGGGGTGAGAGAACGTGTCAGTCTGTCTGTGTTTGACCTTCACATCGGTTCATGGGTGGATGGATGGACAGAAGGATGGGCTCATGGGGGTTGATCGGGAAGGTGGGGCAGATAGAGACAGCCAATGGATAGCTCAGGTGGTAAGTGGCTTGACAGTCGATGATTGTCACCTGCAGCACACCTTTGTGAGAAATCCATGGGCATCCTTTTCTTCCAGATATAGGTAGCCTCAAACCAGGGAGCGTGGCTTAGGGAGCAGGCTGTCAGGTGGACTACCATCCCCACTCACCTCCCCTCAACTGGCCTCCCTATGTGTGACACGCCTGCCTAACTAGAGAAGAGAGCACTGGGTAGAGGTGGGCACAGGTGTGGGTGCCCTCCCCAGCATCACTGTCCCATGGCGAGAGGTCAGAAAGGCAAACAAGCAATGGGGGTAGATGCTGAGCAGGGAGGGGCCCTGAAGCAGGACCTGGGGACAGCCAAGGACAACTATTTTGTGAGAGAGGAATGAAACCTTGCAGGTCCTGCCACAGAAGCAAGAAGCAGAGGAAAGGCCATGGAGAGACTTAATAAAGGGTTTTACAAGGGTACCTGGATCCCAGGGGGAAGTAGTTTATCCTTGGGGCACAGTGGCAGGGCTCATTCAGAACGGTGAGTAAGTGTCAGGTGTGATATTCAAAGACCTGGTTCCTAACACCAGAGCACAGCGAAGGTGGAGGTCAGAAATAACTCCCAGCCACTGAAGGAAGTATGGCTTCAGTCTGGAGAGCTCAGAAAAGACTCGACCCTAGGAGCCCACACAAGCGGTTATAGCCACAAGTGAGAGGGCATTAGCAACAGGAAGCTAAGGATTGAGTAAGGCAATGGGGAATGGTGGGAGCCAGCAGTTACAACGCTTTACTCACCTGGATGGGCTTGTTAAAACACAGATTACCAGCCCCACTCCCTGCATTCTGACTCAGTAGGTCCGGGACGGAAACCAAAAAAAAAATCTGCACGTCTAACTAGTTCCCAGACCTAACAGGTTCCCAGATCACGGTGACACTGTCTGTCTGGGGACTGCACTTGGGTGAAGCATCTAAGCGGAAGAGAAGCTGGAGGAACTGAAAAGCGCCCCAGGTTCCTCGAGGAACAGAGAAACAAGAAGGGAAATGTTGGGGAGAGGGGACCCAGGTCCAGACTCGAAGGGCTTAACTCTGGGTCCAAGAAACGTCATTGGTAACTGGCCAGTGGCACCCGAGAGGCCAACAGAGATAGGAGAAGGCCATTTGGGGACCCCCAAGGAGGCAGTGGGGGGTCTGTAGCTGAATCGGCTTTACCACAAAAGACCAACTCTCTTAAGAGACTCACAAGGCAAGACTGACTAGGGGAGAAAATGGAGCCTGTACCTGCAGGTGTCTGCTGTCTGCCACCTGTCCTCCCAGGATAGGGCACCCTGGAGACATTCCACCTCCACTGCATCCTTGTCTTGCCCCAGTCATCTTGGGATGGTTGAGGGGACAGCAACAGCATGGCAATGGACCTGAGGCTGGCCCCCCTGGAGCTAAGTGTAGCCCAAGTGAGCACGTAACCTGATAGGACTGGCTCAGACTCTGGCCCTGGCTATACCCATTCCTGCCCTCGAATAAAAGTCTGTTGCTCTGTCCCAGGCTAAGAAGCCAGCATCCAATGGGGCATCGGGCCTCCCTCCCAGTGCCCAGCTCAGAGTGGGTCCACGCAGAGAGGACTCAAGCTGCCTGTTGCCTCTCCCCTTCCGTCTAGCAATGGCCACAGGTTTCGGGACCAGCTGGGTCACTCTCAAAGATGAGGCCCACATGAACCTGCTGGGATCCCACGAACACATATTGGACCTGAGCACAGGGAGTGAGCAGGGTTTGAATTCAGAGAAAATCGAGGTGTCTAGACAAGAGGGGTGGGGTGCTTGGTATCCGCACACGAAGCAATGGAATGGAGACATTGAAGCTGTTCCTGGAGGTCACTCAGGGCACCGCTGTCCAGGGCACAGCCAGGAGACCTGTGTTCTAGCACCAATGCTGATTGTCACTAATTACCTCTACGACTCTCAGCAAGACCTATTACTTCTCTGGGCCTCAGCTTCCTTATCTGTTAAAAAAAAAATGATATGTTGGCAAACTCAATAATGCTCAATAAACTTTCAACTACTGAATGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038026:ENSMUST00000062387:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=NA C2=0.300
Domain overlap (PFAM):
C1:
PF0100715=IRK=PU(76.9=91.2)
A:
NA
C2:
PF0100715=IRK=PD(22.8=69.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types