BtaINT0080663 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019427 | KIAA0232
Description
KIAA0232 [Source:HGNC Symbol;Acc:HGNC:28992]
Coordinates
chr6:118171129-118175686:+
Coord C1 exon
chr6:118171129-118171240
Coord A exon
chr6:118171241-118175588
Coord C2 exon
chr6:118175589-118175686
Length
4348 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TCCATTCAAAATGATTTAAGAAT
3' ss Score
1.57
Exon sequences
Seq C1 exon
CAGTTCCCTGTACTGAACACTGACGTGCATGGAATGAACCGGAGTCAAGAGAGACAAACCTGGTGGGAAAAAGCCTTGTACTCGCCTCTCTTCCCCGCCTCGGAGTGTGAAG
Seq A exon
GTAAGGAGGCCTGACGCGGTCCTTCCCCTGCTCAGATCTCTTAGCTCCGTAAAGAGCAGTCTGTTCCTTTTGCCGTGAATATCGGTCCAGGAGCATTTGTGTGGCAGGCGTTGGTCAGGGGCAACTGGGGACACAAGAGGTGAGCACGGGCTGGAACCCACTCTTATGCCCACCAACAGCCTAGGGCGGGGTGGGCCGTGGAGACACGTAAGCCCCCAGTGAGGGGGGCAAAGGCGGGAGGGGCGGTGGCCAGTCAGGGTGGGAACCAGAGGTCCCCCCAGGCCCAGCCGAGGCTGGAGAGACCAGCAGGGGATGAGCCGAGTTGGTCAGCAGGCTCGTGAGTTCTGCCGCGTTAGGTGGAGTTTGAACAGGGAGGAGGAGAGGGCCGCTTGCAAGAGCTCACCTTGGAGGGTGTCAGGTCAGGTGCTTTTTTTTTCTAAAGCAATTCTAGCAATAGAATCAGAGTGGGGAAGGAATGGAAAGACTGGAGGACACCTGCCGGGGCTCTTGGGCTCTTGCTGTGGTCTGGGATGACAAGATAAAGGCCCCTGTTGGGGAAGGAGAGCAGAGAGCAGCCCTGGGGGGCTGTGTGGAGGAGGCCAGAGTTTGCTGAGTGCCTTTCTGTGACAGTGAGCCGTGGGAGAGCACTTGGGCAGACCAGGGAGAGGGACATGGGGGCAGACTGGGGAAGGGCTTCTCGAACCTCCCGGCAGGGGCACCTCCTCGGAAGCAATAAACAGCCCGGGCCTGCCATTCTGGGGGAGGAGAGAACCGAGGAGGTGGCCAAGCGGTCAGCTCGGCCTGACCCTGTGCGGCCAGCCGTGGTCGCCTGGGCTCCGCCGGCTGCGGTGCTGGTCTCGTGGTCTTTCCGCTCAGAGCCCTGGGAGGAGGCCGGGCTCCGGTTGGTATTCACGTGTTCACGTGTGCGTCCCATCTCCCCTCCCCGCCCGCGGGGCAGTGCCCTCGCAGCCTGGCCTCAGCTGACAGGGGGACCTGGGGTTGTCCACGTCTTCGTCCTGTGGGCACAGAAGCAGCTCCCCACCTCTGCCTCCCCAAGGGTCATCAGGGCAGCAGAGTCTTCATTTCCAGCATCTTTTTTATTTAACAGCCTCTATTGAAGGCCGGCTCCTCTGCCATTAGCTAATATTTAGCCACTCTTCATTATTTCCAAGGTGCTTCAATCTTTACAGCCCCCACAAAAAGCCTGGTTTTGCCTCAGATGGTGCACCCATCTGAATGGTTCCAGCTGTTCGGCCCAGGCCTGAGTGCTGGCCGTAGCCCTGAGGTCCAAGCGTGCTCTCTCTCCAGCGGCCTCTGCACACTGCGCTCTGGAGATGCAGGGATGATAGGAGTGCAGAGTGGACCCTGACCTGAGTCCAGTGGGAGCCCTGACTGAGCAAGTCCCAGTTGCGGTCACGGGGAATGCAGATGGGGAGGGCCAGGGGGCCCCACACCCAGGAAGTGCCGCCTGGAACGGGGGCGGGTAGGGGCCTGCACGGGGTGACTCCCAAGCACCCTGGGTTGGCTTCATCCCTGGGCCGCGGGGGTGACCCCCAAGCACCCCGGGTGGGCTTCCCCTGGGCCACGGAGACGTCATGGTGGCCTCGGCCTGGTTTCCTGTCACTAGCGAGGCAGCCGCTCCAGCTCTTGGCCTGTGGTTTTCCGTGCTGTGCCTTGTAGGTGCTGCACCGGCTCGTGGCACACAGAGCTCTTTGTAATTGCCGTGTGGCGTGCAGGAACGTTCTCAGTGGACAAAGCACGGTAGCCAGGTTTTCAGATGACCTGCCACTCTCAGCTACCCCTGGTGGTTGCCTGGTGGTGATGTCATGAAGCCTGGTTCTTCCAGCCCGGGGTAGGGGGGTGCCGGAGGGCAGGGTGCAGTCTGAGGAGCAGCTCAGCCCGGAGAGCAGGTGGCCTCACCGGCTCAGCAGCCAGGCCTGCCAACTCCCCTCTCTCCTGAAGCTTCTGACGCTGCTCACACCTCATAAGAAGCCTGTGCAGCTCTGAGTCAGGGCCTGACTGGAGAGCCCCAGCCTCCCTGTTGGGGAGGAGGAAGTGTTCCTTTTTCCGAGCAAGTCGGGAGATGGAGGCCCCAGAGGGCAGCAGCACGACCCTGGAGGGCAGCGAGGGAACGCCCCCTCCCTTGCCCTGCTGTGTGTCCACACACACACTCCTTTGGTCAAAGCCTTCTTGTACACTCATCTCATGCCAGGCGCTGTTCTGGGCGCTGGGAACACAGGGACCCCAGGGAATCAGGACCCAAGCCGGGACTACCTGCAGGCGCGGTTCATGCAGGGACCGGGGCAGGTGGCATGTGAGAGCCGAGAGCATGTGCAGACAGGTGCCCGCAGGGGCGCCCGCCGGGGGAGCAGGAGCGCACTTGCTGTGCCCAGGGCGCCCGCCGGGAGGGCAGGAGCGCACTTGCTGTGCCCGGGACGCCTGGCCACGAGGGCCGTGCAGACTGTGCCTCCACTGGGCTGTCTTGAGCTTCCGCCTGCAGGGCCCACGCACTGGGTTCGAAAAGTGTGCGTGTTCTTTTGGTCTCAGAGGGCCCTGCAGGGACTCAGTGCAGGTGATGGTTAAGGGTTCAGCATACAGAGCTGAGCTGGAACCCAGTGCTTCCCTTCACCAGCTGCTAGACCTCCGGCGATGACAGGCCTTTCTGTGCCTCCGTAGTCTGTATTTGTAAAAAGAGGCTAAAAGTGATGGCTCCCTTAGAGAATAGTTGTAAAGACTGAAATGCCCAGAACTGGCCTGGCCTGTGGTCACCAGGGACGTGAAGAACCCTGACAGCAGTCAGCATGGCCCTTTCCTGATGCCTGTGGCATCCACTGACCCCTTCTGTCCGCATAGAACCCCTAAAGCAGGAAGAGAATGGGACGGCAGTGGGGTTGGGAGAGACCTGCTCCACCTACTGGCACGTCCCAGCCAAGGACATAGTCACCTTCCCACCTCATCCAAGGGGTAGCCGAGTGCCGTGGGGCGCCGGGATGATGAGAGCTTGGCAGGTGAGCTGAGAAAAGCTGAGGCCTGGGCCGGGTGCTGGGTTCCTGCCTCGGTGGAGCCGGGGTGTCTTCACCAGCTGTCCCAGGGCGGGTGGGCCCAAGGCCAGGCTATGGGCAGCAGCACTCGAGAAGACGCTTACCGTGTGTACCAGCCTTGCACTTGAGGCCGCGCGCCTGTCTTAACTTGCACAGAAATCTCTCTAGAGATGAGAGCACTGGGGCTCTTTCAGTAACTTGCCCCCAGTTACAGCACAGTTAAGTAGAATCTCCCCGAGTCAGCTGACTCACGAAGGAGCACCAGGGAGGTTGAGGGCCCCAGGCTGTTGGAACTGAAGGTTGCGGAGAGTGCAGCCTTTTGTGGGGAGGCCAAACAGGGCACACAGGCCCTCCCCTGGGGGTGGCGGGAGGGAGCAGTCCTCAAGCTGGCCTGCCGCCGCTGCCGTGGGCCCCATTTCATCGCATGCAGCGCAGTGACTGCAGGCAGCCAGATGATGACTCACGTGACGTCAGGTCTCCTCCCCTGCACCCTTCCCACAGAGCGAAGGCGCCTGGGGGCTGATCTGGGTTAAGTTGGGCCTCAGTCTAACCCTGCGTCAGGATCGCGGGGAGCCCCGCCGGAAACGGCTGAGACCAGAGCCTGACCAGAGCCTGACCATAGCCTGCCCCAGAACGAGTGCGCGGAGTCTCAGGCGGGCCTGGGGCTTCCAGGCTGGTCTTAAGGCTCCCCAGGTGATCCTCACGCAAAAGCAGGGTTGAGAACCACAGGGCCAGGTGACTCGCGCTTGATGCCTTGAGTCCCAGCGTGCAGTCCCGAGCCCCGCCCAGTCAGCCCGCGAGCCCCTCCCCGCACACCGCGCCCCGCCCCCCCCCCCCCCCCTCCTCGTCAGATGGCTTAGTTTGGTGCTGAGCTGCGATGCGTCTGTCACCTTGTTCCAGGAGCGTGTTCCTGGAGCATCCTCCGTCTCCCTCCACACCACGTCCACCCCCGGGGCCTCGCGGGCCTTTTTTATTCTGTGTTCCCAGGGCCTGTCACTTGAGAGGTGCGAGTGTGTTGTTGAGAGAGCGTCTTGTGGTGGGATTAACAAGACTGTGAGGTTATGTTGGCCTCTTTTTTTTTTGTTTGTTTTTACTCCATGAACAATTCATTAGAAGCATTTTTTTTTAAACTGGCCTAACGTTTTCCTGGCGCACACCTGGCTAGCTGATGCTGACCATGTCTGCTTTTAGTGATCTGACTGTTCAGCAAAGAAAAATGAAACAAGAATGGTACGTTTCATGACTGTGTCTTAATGAAATCTCCCCCCCTTTCCCTCTTTTCCCTTCTCCATTCAAAATGATTTAAG
Seq C2 exon
AATGTTATACAAATGCCAAGGGAGAGAATGGTATAGAAGAGTATCCAGATGTTAAAGAAATGCCCAGTAATGAAGAGCGTCTGTTAGATTTTAATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019427:ENSBTAT00000025878:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.395 A=NA C2=0.485
Domain overlap (PFAM):
C1:
PF153761=DUF4603=PD(2.7=92.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]