HsaINT0085672 @ hg19
Intron Retention
Gene
ENSG00000170871 | KIAA0232
Description
KIAA0232 [Source:HGNC Symbol;Acc:28992]
Coordinates
chr4:6873301-6878484:+
Coord C1 exon
chr4:6873301-6873409
Coord A exon
chr4:6873410-6878386
Coord C2 exon
chr4:6878387-6878484
Length
4977 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTCCATTCCAAATGATTAAGAAT
3' ss Score
-0.09
Exon sequences
Seq C1 exon
TTCCCTGTATTGAACACTGATATACAAGGAATGAATAGAAGTCAAGAAAAACAGACCTGGTGGGAAAAAGCCTTGTACTCTCCTCTTTTTCCTGCATCAGAGTGTGAAG
Seq A exon
GTAAGGAGACCTTTGTTAGTTCATTTATTCATTGCAATTTGTAATTTGTTAAGAGCAATAATTTCTTTTTCTATGAATATCAGTCCAAGAAACATTTACCAAGAGGTTTCTGTGTGGGTAGCACTTTGTCATGCACTGGGGACACAGGGAGGAATGAGAACTGGGCCCTGCTCTGAAACAGCCACAATCTGATGGAGGGGAAAGGCATGGAAATATATCCAAGCGTTACTGACCATGGATGAGGTGTGTATAAGCCACCACTGAGTCACAGAGGAGGAAACAGCGGGCAGTCCCTGTGAAGAGAGTTGCCTGCACAGAGGCAGGAGGGTCGCCGCCAGGGGAAAGCACAGGGCTCCATGGCTCAGCTGAGTTGTAGCTGACGCGGGAGAGACAGACAGGGCAGGAGCCTGTCAGAAGGTTTGAGGGCTTGGCTAGGTTAGGTAGCGTCTGACATGCAGGAAGGGAATGCCGTTGACAGGATTTAAATTGGAGGTTGTCAAGGTCAGATGTTGTTTAGAACAATTCTAGTAACAGAGTGGAAATGGAATTGAAAAACTGAAGGCTATTGGCCAGGGTTTTAAGCCCTTGCAGTAGTTTGGGAGGCATACGCTAAAGGTCTGGACTGAGGCAATCAAAGCGGGGACAGAGAAAAGGAAACAGGACCGAGAGGTTTTGTAGAGGAGGAGTTTGTTGGATTACTTTCTATGAGGAGTAGTTATGGGAGTCTAGGTAGAGAGGGAGACAGGAGTGGGCGCTGATGCGGTGAGGAAGATTTTAGTTTAGGGTATTTTTTGAATGAGCAGTCTGTGAGGCCTTCCAGGTAGACACCCAGAAGTTGTTAAGAAACCCTGAATTGAAATTTTGGGAGAAGTAGGAACTAAGGATGCAACCAGAATTGATTAGCTCAAGAAGTTCAGCTTGTCCAGATTGTGGTCTCCTGGGCTTCTATTGGCTACCACATTTATTTAACACCAGTCTCCTGTCAGAGTCCCGAAGGGGTTATGCAAATCTCTTGCATTTAAATTTACGGGTTCACGTGTTTGTCACATCCCCTCAGCTAATTTGTAGTTAGTGTGGAGCCAAGTGACTTCTCTCTCACTAGCCACGATGCCCTGCACACGCCTGTGTTGTCCTCGGAAAGCCTCCCTGGCATCCCTCGGCAGCATGGGCTATAGCTGATGGGATGGAAGGCCAGCTTGGCCAGGTTGACTCTTTAGGAGTGGAGCGTTTGCTGTTCTCTGGTCTGTAGCCACAGACAGCTTCCCAGGACCCTGCCTTCCTCCTTCCCAGAGGTTCATCTGGGTCATAAGGAGAGCGTAGAGCTGAGTCTTCACTGTTAGCGTCTTCGTTGATTGAACAGCGTTTATTGAAGGCCCGTTGCTGCTGCCGCCCTACCATTAGCTCATATCTGGACAGCCTTGGTTGCGTGCAAGGTGCTCTCAAGCTTTTCTTTTACATAATTCCCACAAGAACCTTAGGAGATGCCCCCCGCTAGTTTTCAGATGAGGAAGCTGAGTCTCAAGTTTAGTACTGTAATTTGCCCGAAATCACACAGTTAACTATTAAGCATGGGCTAGAATGTAGGTTGTGATTCTTGTGGTCCAGAAGTTTTGCCCTCTACAGCAGCTGCCTGCACTTGGTACCAAGGTAGATGCCAGGGCAGTAGGAGTAGGACACACAGAGCTTCCCTTCATGTGTGTCCAGTCTGGTAAACTGGGCAAGTACAAGACACAGACACAGTTAATGGAATGAAGGTGGGATGTGGCCACAGCTGTGCCACAGAGGACCTCTCAGGAAGAGCTAGGAGGGAGAGGAGGATGCCACCTTGTGGAAAAGAACCAATTCCTTGCAGTGGCATAGGATGATTTTGAGACACAGAGTTCATGTTTCTTTAGTAAAGGGCAACCTTAGCACCCTTAGTCCAGTTTTCTGTCATTAGTTAGTAAAGAATCCAGTTTCACCTCTTAGCTCTAGGTTCCTGGTTATCTGTACAGTCTCTTAGTGGATACTGGTGTTTGTACATAATATTTTTGTTTTTACAGTGAAGTGGTATATAGAGAAACTCTCAGTGCATAAATACTGGTAATTATTTCTTTTGAATGACCTTTAGCTCACACTGTGAGTTAAGTCCCTGCATATTTGCCCTGTAGCATCATGAAGCATCCTTCTTTAGCTTATGTGGGTTGGGGCATTTAGTCTCAGAAGGATAGCCAAGAAAACAGGTAGTCACTTACCTACTCAGCAGAAGTGGCTGGGGACTCCTAATGCTTCTAATATTGGATATGATTCATCACAAGCAGTTGCTGCTCTGAGCCAGGGGCTGACCTGGGAGCTCACAGCATCTCTGGAAAGGAAGAGTAGCATTGTCCCCTTTACAGTAAGGCGAGGAAACAGGCTCAGAAAAGAGGCAGCTTGTTCAGGTAACCATATAAGAAAGCCCCAGCTTTGTGCAGTCTGCCCCCTGCTGGCCTTGCTGCGCATTCATATGTGCATCCCTTCAGCACTTGGGTTAGGCACTGTTCTAGACTTGGGAATGCATAGGCAAACAGATCGTGTCCCTGTCCTCCCCCTGCTCAGGTACCTTCTCAACAGGGACTTGAGGAAATAGGGCACAGACCATGTGACAGCTGGGGCTGCCTGCAGGGAGAGGTGCCAGGCAGCAGTGGCTTGTGCAGGGACAGGAATGCATTGGGTATGCCCCCAACATGACTGGCAAAGAAGGGATGGCATGGGAGTGTGGTGGGGATGAGGCCAGCCAGGCAGCTGGGAGCCAGACCACAGAGGGCCTTGTAGACTCTGTGCACCAGGAGTGCCGTCCCAAACAGCAGTCTCCACAGCTCACGCCCCTGGATTTTCAGTGCTTTCAAGACTCGAGTAATGTAAGCGTCTGGATGATTTTAGCATTAAAGACAGAGAGTCCTGCAGGGAAGCAGTACAGACAGGTGGTGAAAGGCCCAGGATTGAGAACTGTATTGGAATCCAGAGCTTCTTTCCCCAGCTATTAGGCTTTGGGTGCTGACTGAGCCTTTCTGTGCCTCTGTAGTCTGTATGTATAAAAGGAGGCTAGAAGAATGCCCTCATTGTAAGGTAAAGTGCCTAGAACAGTGGCTGGCATGTCATAGCCCGAAACAGGGTGGTGGTCAACTTGAGCATCATGAAGACTATCAGCAGCAGTTCAGCATCACCTTTTCCAAATACCCTGTGGCACAATAAAACCCTCTTGTATGTACAGAATTCCTAAAGCAGGAAGAGAAAATGAAGGAGTGGGGTGTGGAGATGGGCCTGCCTGCCTCTGAGCTATCCTTGTCAAGGAAACCATGTCCTATCCACTCCATGCCCCTCAGCCAGTATAAGTGGTGGCCATATGGAGTGGGCCATGGAGTGAGAAGTCAGCCAAGGAAAAGATGCCTCCTTAGGAGAGATGAAGCCAGGGTTCCTCCCAGCCTCAGCAGAGGACACATGGCATCCTCCCCAGCCGCCCTAGGGCAACCACGCCTCCAAGCCTATGGCTTTGATAAGCAGCGGTCATGGGTGCAATGTGTGTGCCCGGCACTGTGCTTGAGGCTTCACCTCTTTGAATTTGCACAGAAATGTAGGAGGGAAAATGGTGATGTTCTCATCTTAGAGATGAGGATACTAGGGCTCAAAGAGGTTAAATAATTTGTGCAAAGTTACATCACAAGTAAATAGCATGACCTGGAATTGACTGAAGTCTGTCTAATCCCAGAGCCTGGGGTATTCTCATGAACCTCAACTAGTAACTTGGAGTTCTTGGAGCCGTCAGAGAGAACAGCTGTGGAGAGTCTTCCATGTGGCCAGTGCAGCTGCAGGAAGCAGCCCAGCAGGGCCCAGATGGTCTTACCCTTGGCACAGCCTCGCTACTCTGTGCCAAGGTAGAAGGGCGCAGCAGTCACTTGCTCCAGCCTTGTCCTTTGGGGTGTTGTGCAAGGGGCAGGCATGTCATCTCGTCAAACTACCTTGTGGCAACTCTGTGGCAGGGGATGGGGGGTGTGATCTGGTTTTGAGGAAGTAGATGCTCAAGGGTGTTAAAGGACTTAATGCACCATGAATGTCAATGCCAGAGTCCAAAACCCTGGCCAAGTTCCTCCTTTTACTCTGCACTGTGCCTCTGCCCCAGCTATGTTTCTCATGGAGGTAAGGGGAGTAAGAGGCTGTTCTGGATGAAGACCAGCAGTTCTCAGTGCATTAGAATTGCCTGGGAGCAAATCTGCTTTTCAGAAAGTGCCCAGCCCCTGCCCAGGACAGTTCATTTGGAATCTCTGGCAGGAGTCTAAGCCTCTCTAAAGCCCCCAGATGATGAGAATATGCAGCCAGGGTTGAGAACTACTGGGCTCGTTGGATTTGTTTGATATCTTCTCATCCCAGTTTTTTTCCCATTTTGTGGGGCCATTTGCCTGATGGAATCGCTAGCACCATTTCTTTTTCCTATTCATAGATGTGATACATGGTTCAGTATGTTGTTGAGGAAGAACACACAAGGACGTGACCCTGTGTCGTTTCTCCATTGCGTTCCCTTCTGTCTGAGCTTCCTTTGTTCCTCTGTCCTATGAACGTGCTATGATGCACCATCTGTCTCCTCCATCCATTTGTTGTGGAGAGCATGGGCCCTGTGGGTCTCTCTGTCGTGTGTTCCCAGGGCCGATCACATTACAGGTGTGAATAGAAGCTTGTCCAATGAGTGCCTCCTGGTAGAATAACAGGAGTGTATGGTTATGCTGGCCTATTTCTTTTTTTAACTCACCAAACCAAGAATTTTTTGTCAGCATAGCGTTTTTTTTCTCTTACACACCTGCCTGGCTGTGCTTTTAGTGACGACTTAAAACCTCCGAAGGGTTGGGAGACCTAACTGATGTAGCTTTTTAGTGAAAAATGAAACAAGAATGTATGTTTCATAACTGTGTCTTAATGGAATTTCCCCCTTTCCCTCTTTTCCCTTCTCCATTCCAAATGATTAAG
Seq C2 exon
AATGTTACACAAATGCCAAGGGAGAGAGTGGTTTAGAAGAATATCCAGATGCTAAAGAGACACCCAGTAATGAAGAGCGCCTGTTAGATTTTAATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170871-KIAA0232:NM_001100590:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=NA C2=0.545
Domain overlap (PFAM):
C1:
PF153761=DUF4603=PD(2.7=91.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)