RnoINT0083291 @ rn6
Intron Retention
Gene
ENSRNOG00000027623 | LOC680039
Description
hypothetical protein LOC680039 [Source:RGD Symbol;Acc:1596848]
Coordinates
chr14:79318373-79321861:+
Coord C1 exon
chr14:79318373-79318481
Coord A exon
chr14:79318482-79321763
Coord C2 exon
chr14:79321764-79321861
Length
3282 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CTCCATTCACAATGATTAAGAAT
3' ss Score
-0.53
Exon sequences
Seq C1 exon
TTTCCTGTACTGAACACTGATGTGCAAGAAGTAACAAGAAATCAAGAGAAGCAGAGCTGGTGGGAAAAGGCTTTGTACTCTCCCCTTTTTCCCACGTCAGAGTGTGAAG
Seq A exon
GTAAGGAGACTGTGTCACTATTCTGTTCAAATTTCTAATTCGCCAAGGGTCTTTGGATGTGGATACAGTCCAGGAAACAACAAAGCAGTTCCTATGGCCAGCACTCTGTTAGATCCTTGGGACGCCTAAATGATTGCAAACTGGATCCTGCTCTTAACCCTAACCCATAGGCTGGCGGAAAGGTTTGGAAAGTCATTAGAAGCATAAATGGTATGGACCTTTGATGAGATATGTATAACCGTCTTGACCGTCGAAAAGGGAGTCCTCAAGGTAATCTTTGTGCAAAGACCACAACAAGCTGTGAGGCAGGTTGAAAGAACCAGGTCCCGTTGGGCTCAGTTAGTTTGAAGATGAGCCAGAAAGTCTGATGGGAAGGAGCCTACAGGTATGAGAGCCTGGCTTCTGGCTCCAGTTTGGTGTTGGTTGTGTAAAGGACTTGTTTGCAGGGTGTTCAGGTCAGATGTGTGCTGGAACACGTGTAGCAACAACAGAGACCAATTTTAGCTGGGGAACTAGGAAGTGGGAGCAGCATGGGGAGACTTGCAGTGCTTGTACCTGCCTCCTGAGCAGCAGGAGGGAGTTAGAACAGGTTCTCAGTCTGAGTTAGGAAGTGCAATGAAGTCACTCTATGGCTGGGGTCACTGTACATGAAGAACCATATTAAAGGGTCTCAGCGTTAAAAAGGCTGAGAACTACTGCTGTAGAGAGAAGGGTAGTGAGGGGGCCTCTGCTGTGCCAAGGAAGATGCCAGGGCTGTAGGAGTATAGATCCACCTGATCCGTCTGAGCTGGATGAGTTGAAGGCACAGGTACAGCGAACATTACAAGTCAGAAATCCCCATAGCTGTGCCTCAGAAACTCCTCTCCATAAAGATGGAGAAGAGGAAGAGGTGTATCACCATGTAGCAAAGAAGCTGCTTTCTTGGGGGTGTTTATTAGAAGTACTGCATCAGTTTGGTTCACTTTGTCATTCATTAGTAGGAGCCCAGTTCCAACTCTGAGCTCTGCACCTTGGATGTCCAATCTGTTGGCAGGTACTAGTGAGTGGATGTAATACTTTTGTATGAGTATGTGAAATGTTGCATAGGGAAGCTTGGTGGAGAAGGAATGGTAGCCAGTCTTCTGAATACAGTTCTGAGTTCAATCCCTGTGAAGCTCCCTTACAGTAACCGTATGAAGTACTCTTTCTGTTGCCTCACATGGAGGTTATGCAAAAGGATAACTAGCTACTCAATCCCTTGAAAAGGACTAGACATTCCTGAAGCTTCTAGTATTAGAAATGGTTAGTAATCAACATGTGCTTCCCTGGACACTGGCTAACTAGATATTTGAACATCCCAAGGGAGAAAGACTATCTCTTTGTTGAGTCTGGTGAGGAGACAGGGTGTGTCCGGCTGAGACCCCTGACCTAGTCACTTCTGTGTATATGTGTCTCTGATCAAAGTGCTGCTCTGGGGATATATAGACACACTGGCTGCCTGTCCTGGATGTGTCTTCTCAATGGGGTCTGGAGGTAGGGTACAGACCAGCACAGCAGCTGGGATTGGAGGAGCAGTGTGGGGTAGAGCATAGATAGCACGGTTCAGGAGTGTGGTAGGGACAAGGCTGGCTAGGGTAGAGACTACAGAGGGCTTGGTCGCTTTCTCCAGTGCTTGCTGTGTTGTGCTTTGGAGGCTCAGTTGCTGTAGGCATGCATTATTCAGGCTGTGTGGAGTGAGCCCTTTGGGGAGCAGCACAGACTGGTGGAGGAGCAAGGCTGAGCTGGAGTGCCTCTGTGCATAACTTTTGGGCTTCTCTGCTCTGTTGTCTGTATTTGTAAAAGGAAGCCATCCCTATTGGGATGATTGTGAGGAATAAAGATGCCACTTCCGCAGGCCGGGCGCCTATAGCTGTAACCCACATACAGTTTTTTGCTCAACAAACAGTAGCATTAACAAGAACATTGGATGAGCTCAGTATGATTCTCAGCCAAACCCCTGCATGGAGGCGTGAAGATGGACTTTCTGCAGTCTCTCTTCTGGCCCTGCTGTGTGTGTGTATGGAATGAGGCCACGAGAGCTCAGTGGCCTCCCAGCCACCCAGAACCCATGTTCCAGGATGGTGCTATAGAAGATGTTGCTATCCCTGTCCACTTCTCATGTAGCACCTCCTTGAATAGGATGATGTTGCTTCTGTTCTAAAGAGGTTGGGTATGTGGCTTGCAGAGTCATGTCACAAATAAGAAGCAGTACCTGGCATCTACTATGGTCCTTGTCACTTAAAGCCAGGGTTATTCAAGGATTGCCCAGGACTCATAGGTTATGGAGAATGTCCACATGGCAAGCAAAGTCTGTACCTGGTGCCCAAGAGTATAGCACTCATTAAGGCTGGCCTTGTCTTCTGTAACTCTGACACACAGGAGTCATAACATCCATTGACACGTGTGGCATAACTCTATCGAGCAGGGATGCTAAGGGATCATCACGTCTGAGCTCTTGTCAGCGCCAGGTCTGAACTAGCTTATTTGGAGAATGCATCCTTCTCTGTAACTCCATCAGCAATTTCTTCATGGGTCAGTGGACAAGAGGCTAAACTAAGACTACGTTTAGCACAGGGGCTGCTGCTCAGGAATCACCTGGAAACTTCTTAGAAGGACTGGTGTTCAATCTCCCAAAGCCTAGGTTTCTGCAAATTCCTTAGGTGACTAAATAATGCAGTGCATAGATGAAACACAGTTGAGGCTGCTGCTGGATTGGCTTCCTCTAACTCCAGGCTACACTGCCTTCTCATTCTGTGAGCCTTGGCCTACTGGACCATGAGCCTCCATGTGCACAGGCGTTACCGACATGGGCATGCTGTTGAGTTAGATGAGGCCAGCTGGTGGCCTGCTTTGCTTTCTCATTGGGCTGCCTCTCTGGAACCTCTGCTCCTGTTCCATGAGCATATCTCCCACTGGACACTCATTCTTGAGAGCATGGGTCTCACTGGTCTTTTCCCCTGTGTCCCAGGACCATTACATCATAGATCTGTGTGTATATTTGTTGAATTGTTGGGATAAGGTTTTACGGTAGAATATGCTTATGCTGGCCTGGTTTTTATTATTCATTACATACTCGTGGTTGGAGTTTTCAGTTGGTGTCACGTTTCTCATACCCTCCAGACTGGCTGTGCTTTCAGCGACAACCTAAATCTCCAGAGGGGGGGGGAGGCCTTTCAGCGAGGCGAAACAAGGGTGTGTGTTTCAATTGTCTTAATTGAATTTCCCCCTTTCCCTCTTTTCCCTTCTCCATTCACAATGATTAAG
Seq C2 exon
AATGTTATACAAATGCCAAGGGAGAGAATGGTATAGAAGAATATCCAGATGCTAAAGAGACACCCAGTCGTGAAGAGCGTCTGTTAGATTTTAATAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027623:ENSRNOT00000029191:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=NA C2=0.465
Domain overlap (PFAM):
C1:
PF153761=DUF4603=PD(2.6=91.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]