DreINT0179414 @ danRer10
Intron Retention
Gene
ENSDARG00000052244 | zgc:158564
Description
zgc:158564 [Source:ZFIN;Acc:ZDB-GENE-070112-1662]
Coordinates
chr7:39403337-39404655:+
Coord C1 exon
chr7:39403337-39403445
Coord A exon
chr7:39403446-39404153
Coord C2 exon
chr7:39404154-39404655
Length
708 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
GTTCTCTACTTTGCTTTTAGGAA
3' ss Score
9.7
Exon sequences
Seq C1 exon
TTTCCTCTGTTGAATTTTGGAGAACAGTGCTTAACCAACATGCAACAAGAAGAGTGCTGGTGGCAAAGCTCGCTATGTTCTCCTTTATTTCCAGGTTCTCAGTGCGGAG
Seq A exon
GTAAGAAGAGTGCACCATTTAACAATATTGATACTGAGGTGTCAGTTGTGCAGTGCTTTTATAAAACCCTTTAACAAATAAAGGCTGGTTTATACTTATGCATCGAGTGATCGCCATGACCTCTTGCGCAGGCCTTGCATGTAGCCGTGCATGTATACTTCTGCATGCTGTTTGTGTTGCTCTGCTATTACACTTCCGAAACCCTAGCTGGCAGTGAGGTTTTAATGTTTCTCTGTGGCGAGTTCCTTCACGGTTGTTTTTTTTTCTTTTTCTGAGCACTACCTTAATGTACAAGCAGCTCAAATTCCCTCATTCAGAGGTGGGAACAAGCAGATGTAAATCAGCTTTAATCATAAGGTAAACGCATAACAAAAGTTTCCATCTGGAGCTCCTTCACGAGATTCAACACTTGTAAACACTCGATCCATCAGGCTCAGCTATCATCACTGCCCACACTCGTCACTGCTACCATGCTGACCAATCAAAGCTTGCAACATTTTTCGAGAGGTGCACATCAGCCATAATGAGGGCTATGCCTCCGTACAAAGGCTGCACCCGACCATTTTCATGTGCTTGATGCAGACGTATAAACCAGTCTTAAATAGGAAATAATCATGAGAAAAGTAAATGTGTTTTTATAGTTGCAACCAAATGTCTATCAAACTAAGTCTGCATAATTCTTAACATTGTTCTCTACTTTGCTTTTAG
Seq C2 exon
GAAGCAGTAATGTATGATTCTTCTGCCGAACATGGAGACATACCAATGCTAAAGTCCTCCTTTCACTTTCAACCATAAGCTTGAGGATCGATATGAGGACCCTTGCAAGAACAGTGTGCCCAAGGCCTGCAGTGGGCTCTTACTTAACCACGCTGTCCTAAGCCCTGTTATTCCTCAATCAGTTCTTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCGTAACGGCAAGATAAACAAAAATATAAAAAGAGGAAAACCTGGCAATAGGTTGAAAGTACAGGTAGACTATTCTGGTCAACAGAATTTATTATAGACTTGTTTTCAGTCTGTTAATTCCAAGGTTGATCCATTTTGCAAAGAATAAAATGGCATAGTTAAGCATTAAGATTGTTCTTTAATTTACCCCTCATAGATTTTAGCTTCACTTTTATGTTTGATCAAGGATACACTACAACTGTGGTCCTGCTGATTGTGCATGTGCTTGTGAACCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052244:ENSDART00000146171:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF153761=DUF4603=PD(17.9=91.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAAGAAGAGTGCTGGTGGC
R:
ACCTGTACTTTCAACCTATTGCCA
Band lengths:
358-1066
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]