GgaINT0068425 @ galGal4
Intron Retention
Gene
ENSGALG00000015538 | KIAA0232
Description
KIAA0232 [Source:HGNC Symbol;Acc:HGNC:28992]
Coordinates
chr4:79431048-79433239:+
Coord C1 exon
chr4:79431048-79431156
Coord A exon
chr4:79431157-79433141
Coord C2 exon
chr4:79433142-79433239
Length
1985 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CACTCCCCGCCCACCCTAAGAGT
3' ss Score
2.54
Exon sequences
Seq C1 exon
TTTCCTGTATTGAATACTGATCTGCAGAGAATGAGTGGCAGCCAGGAAAAGCAGTGCTGGTGGGAAAAGGCGCTCTATTCTCCCCTTTTTCCTGCGTCACAGTGTGAAG
Seq A exon
GTAAGAAACTGCATGCTTGAGCTCACTCACTGTTGCACCTGCGCTAGAACTGAGTGGTCTTTGTTATGGGTTTGAATTGTTGCAGATGAGTTAGAACTGCCACTTATATTTAAACAGAAACAAACACAAAAAAAAAGGAAGTATGTTTTTATAATAAATTATCTGAGAAAGAGCTGGGAATCCTAAGTTAGATCTGCAGTAAACCTCCGGCATGCTTCTAACCAGTTCTTAAGTGAAAGAGCTTTCAAAACAGTCTTACCTCCTATGCAGAGTTGCTTAATTCCACAATCTGGCTTTACATAGCATGTGTTAACCTCTGACTCTGAAAATACTTCATGGCATTTTTTGAACATTTCAATGTGTACAACGTGAAGGCAACTCATTTTCACTGGAATGTAGAAGCATAACTGCCTTTTATAGGTTTGCATAAACAACGTGCTGTTATTTGGTGAATGTGAGGAATTTCTCTCAAGCTGGGATCTGCCTCCTGGCCACCCTTCACAGTGACAGTCCGGGAGTTTTTTGGTCCCGCGCAGAGCATTAAGCCCAGCCTTGGTGGCAGGCAGCTCACTGGCAAAAGCAGTTGTGCTTCCAGCTCTCTGTTGCCTCCCATGTATTTGTAACATCTGACAGTCGGCCAAAGGCCAGGAGTTCCGTCAACAGAATCCAGAGCTTTTTTTGTTGTTGTTGTTCTGGATTTTGCTGCGTGCCAGTTTGTCTTTTCTGGGGAGAAGGCTAAATAAGAACATTCTGTATACTGAACTGTTGGATATCTGATGCTTTCAGAGGCTTAGTGCAAGAAACTCTTTATCAGAGACCTTGTTCCTTAATAGTCTGGAATTACAATAGCCAGTAATTGTTACTGAATTATTTTTAGAGTGCACCTTAAAGTACAGCCAACTAAAGCACGTTTAGATTACCTTCAGGAACATCTTTGCTTAATGAGCTTCCAGCTGTAGAGATGTGTTTGTGCTGTGAAAGGGTTCATGGCTACAGGGTTTGCCTCCTGGGCCTCTCACACTGGGAAAATACTCAGTATTTAGAAAGTGAAGTTATTTAGTGCCCTCATGACAAGTTTGTTTCCATGGTGGTAATTGCAGAGATACTATCTGTGTAATAGCAAGTGCAGTGACTCAGAACTGTGAATATGTATTTTATGCAGAGTAATCCTTTAATTCCTGTGAGTGAATTGTGTCATCTTATTGCTGACATCTGCTGGTGAACTCACAAATTGTCTCGGTGTTTCACTACCTTATTTCATCAGAGGAAAACAGTGCTTAAAACAACAACAAAAGCAATTCCAGGAGCTGCTTAATACAGTGACAGAATTTGTGTGAAGTTGAATAATGCAAGGATTTTATCTTTTAGACTAAGCTTAAGGAAACCAGAGCTTTATACTGAGATCTAATGTTACTGTTTCACAAATCTGGAGTTTTCTGTATGGATAGATATATATTCATGAACACTGATGCATGCAGTCCATATACATTTATATATGGTAATTATATATAGAAGATTATGCTGGAAAACAGAAATTACAGCCATTCTCTTTCACAATTTTTGAGCTTCTGTCAGTATCAGACTACACTGTATTTGGTGTGGGTGTAGAAATATAAATGACTTGAAACACCATGCAGTATCAGAATTGAGCAATGTATGGAACCACTGATAATAAAGTAATTTTTGATCTTTGTGCTGTATTTTCTAGATGTTTTCATTAACTGAGCAGCATTATTATTAACATCAGTTCAGTTATCCAGGAAAGATTTGATGACGCCTCAGTCAGATGTTGTGCTGCGCTATTTGTGGATGTCAGACTAGAATCCTCCACGAGTACAGAGTTTAAGTGATTTAAGAGTGTGAATGTTAAAACTGCCGCTCAAGATGCTTTTATTTTGGCTCAATGTAAATAATGGCGTTCCTCAATTTTTCTTCATTTTTTTTTTCCTTCCTTTTTCCTCTGACCACTCCCCGCCCACCCTAAG
Seq C2 exon
AGTGTTATACAAATGCCAAGGGAGAGAATGGTGTGGGAGAATTTGCAGATGTAAAGGAAATACCCAATGATGATGAACATCTTTTAGATTTTAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015538:ENSGALT00000025047:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=NA C2=0.212
Domain overlap (PFAM):
C1:
PF153761=DUF4603=PD(2.6=91.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGTATTGAATACTGATCTGCA
R:
TGTTCATCATCATTGGGTATTTCCT
Band lengths:
186-2171
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]