BtaINT0081013 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012809 | KIAA1045
Description
KIAA1045 [Source:HGNC Symbol;Acc:HGNC:29180]
Coordinates
chr8:59670845-59674309:+
Coord C1 exon
chr8:59670845-59671030
Coord A exon
chr8:59671031-59674230
Coord C2 exon
chr8:59674231-59674309
Length
3200 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGC
5' ss Score
2.62
3' ss Seq
TAGCTCTTCTTCTTTTTCAGGAC
3' ss Score
10.41
Exon sequences
Seq C1 exon
GTTGTTAATGATGAGATGTGTGATGTCTGTGAAGTCTGGACGGCCGAAAGTCTCTTCCCGTGCAGGGTCTGCACCAGGGTTTTCCATGATGGCTGCCTACGCCGCATGGGCTACATCCAGGGAGACAGTGCCGCAGAAGTGACCGAAACGGCCCACACGGAAACAGGCTGGAGCTGCCACTACTGT
Seq A exon
GTGAGCCTTGGCTGCAGGGACGGTTAGCCTTGCACTGCTAAGGACTGGGCCCTTTCCCTGGAGGCCCAGTCTTACAACACTGGTTTCTGGGCAGTGACCTGAAGAGTGTTCCAATAGTACATACAAGGGCTAGGACAGGCTTTCCCTAGCTCAGTACTGTTGACACTTGGGGCACAGTAATTCTTTGTTGTGGGGGCTGTTTGCATTGTAGGATGTTTAACAGCATCCCTAGCCTCTACCCATTAGATACCAGTAACACTCACCCGCAGTGGCAACAACCAAAAATGTCTCCAGATGTTACCAAATGTGTCCTGGGGGAACAGGACATTCCAGTTGAGAACCACTGAGCTGGAGAACAGAATGCATAGGATGAGACCTAGTTATTCAAAATTGATTCTGCTTGGAGCAGTGGTGGTTTAGTTGCTAAGTTGTGTCCAACTTTTCCAGACACATGGACTGTAGCCTGCTAGGCTCCTTTGTCCATGGAATTCTCCAGGCAAGCATACTGGAGTGGATTGCCATTTCCTTCTCCAGGAGATCTTCCCCACCCAGGAATCAAACCCAGGTCTCCTGCATTGCAGGCAGATTCTTTACTAACCGAGCAATGAGGGAAGTCTTGCTTGGAACAGTATTTAATCTAATAGTTGATAGTTGTCATTCATTGTACTCATCTGGAAAACCAACCTGAAAGCCTAACTGGCTTGCTTTCAGTAAGAATAGATTCTACCTCAGGAAAAGTTCTTAGTCCTGAGATCCTCATTTGGCCTTCTACATAACTCTTTGAAGCCTTTTTCTTCATCTCTGAAGTAATCATTTTGTGACTTAAGTAACAAAGACCTGTTGATTCAGAACTTTGCAAATTATACATAAATGTCCTCTAACTCTTGAGAAGATAAAAATACAGATTCATGTCTATTTCTCAGTAAACCTGAGTAGAGTTCAAGTCTTGCTTTATTGATCTGTTGCCCTGCAGATCTTCATTATTCACTGATTTCAGAGTAAGGATTATAAGTTGATCCCCTCTTCTTCCTACCACCAAGGAGAAAGTAAAGATGTTCTGCTTTCTAACAAATAACACATTCTCCATGTGTTATTGTCCATAAAGTGAAGTATAGAACAGTTACTTCTAGTCACAGGAATACCTTCTCCCCAGCTGGAATATGACACAGCAGAGCCTCCTCTACAGGCAGTCTCTCCTAGTCATCACTCCTCCAAATGCTAACTTTTTCACTCACAGCAACTCTGTTTGGCAGTACATCTCCTGTGATTGCCCAGCCACCTGTAATTTGGCTTGTGTATCCATCATTCTGCTGAACTGGCTCTTCTAAGGTCACCAGTGACCTAACTGTCAAGTTCAGTGACCTTTTCTCAGGAATCTTTTACTTGACCTCTCTGATGTATTTAGCACTTCTTATTGCTCCATTTTTTTTTAGGGTATGGATATTTTTGTGAGAATTTTTACACAAAATATGGAAATCAGAGAAAATAGAAAATCAGTAAAATGCCATTTGACTTGTATAACCACTGTTAACATTACCTCTACATTGCACAACTCTCTTTTCTTGGCTTCCAGTACCCTCTACTGATTCTCTTCCCAACTTCCTTCTCTGACCATTCTTCCTAAGTGCCCTTAGTTTCTTGTCCCAGACCTAAATGCTGATGTCTCTCAGGGTTCTCCCACTATATTCTCTCTCTCTGGATCTTCATCTACTTCAGTGGCTACTCCACCACCTAAATACTAATAATTCCCAAATCTGTGGGTCCAAACCTAAATTTCCTGTCTCTTATATCCATCTTAATGTCTCACAAGTACTTCACACTCAACATGCCCCAAAATGAATTCATCTTTTTCCCCACACCCATTATTCCCTCCATTCCTTGCCTCTGTAAATAGTAACACCACCACCGCCCGCTAGTTACCAGCCCCTACTCATTTCTCTCCCTCACCCCTCACATCCAGCGGGTCAGCAAGTCCTTTGAACTCTACCTCCCAGTCTCTCTCAAAGCTTTCCCCTCTTCTTCATTCTCATGTCTTAGTTTAGCCACTCATCTTTTCTTTATTGCATCAACCACCTAACTGCCCTCCATGCCACCAGGCTTTGCCCATGTAACCCATTCTCTACACAGCAGACAAAGAGCTGACCATAGCACTCCACACTTAAAAACCTTTCTGTGACTCCCCTTTGCTCTCAGGAAAAAAGGCCCAGTTTGAAGGACTCAATAAAGGGTATTTGAGGCACGTCACAATCAGGCTTCTGCTGACCTCACCTCCCTTATCATTTATCATTCCTCCCTACCCTCTCCCAAGACAGACACACACACACAGTCACACTCTACACTCCAGCTGTACTGAACGTCTCACAATGTTATACACCATTGTGCCAAGTATATACTAGGTACTCAAAAAGTATTTATTGAAAGAATGGTTTGGATTCTTCATGAAATCCACAAATGAATAGTCATGAAATGTCTGTTCCTATTCTTTTCTGGTATTTTAGAGAGGAAATGATCTACTGTAAAGAATCTTTGGTAGTTTAAAGACTGTAAGACTATAAATTAATGCTAACAAAATAACATGTCAGTGCTCTTTTGGAATTAAAACTTCCATGACACCACTAAAAAGAAAAATTCATTTGGTTTTAGGAAATTTTTCATGATGGCATCTCTTTCAAAACCATTCTGGAGTGAAAGTGATACAACTTTAGGATTAAACAGTTTTACCAAATATGGAAACTGGAGTTAGAATTAAACTTTTTAAACTAAAATACTCTTTGAACACAGTCTAACACAGAGGCCAGATATGTAAAATAGATAAAGATGGAGCTACTCTGGTTGATGGAGCTGAGGATTCACAACCCTACCCACTTTCCCCCTTATTGCTTGCAGCAGCTTCCTAAGGCACCACCAAGGAGCCCCTAAGCTATCTCGGAGAATAATCCAAAAGCCACTACTTTAGTAAAAGGGACTTGGGGGTGGAGCCAGGATAACTGGGTTCTGGGGATGATCCCAGCCAGAGCTGGACAGCTCTGAACAAGTCCTTTCCCCTTTCTGGGGCCTCAGTCTCCTTGATTGTGAATGGGAGGCTGGGATTAGATGATCCCATAATTGCCTTCCATCTGAAATACTGTTTCACCCTTCTTGATCCTTGGCCTTTCTTTCTGGCCTATATGGCCATTGATTTAGCTCTTCTTCTTTTTCAG
Seq C2 exon
GACAATCTCAACTTGCTGCTAACTGAGGAGGAAATGTACAGCCTCACAGAGACCTTTCAGCAGTGTAAAGTTATCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012809:ENSBTAT00000017015:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=WD(100=69.4),PF0062824=PHD=PU(93.3=90.3)
A:
NA
C2:
PF0062824=PHD=PD(3.3=7.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]