RnoINT0110442 @ rn6
Intron Retention
Gene
ENSRNOG00000000129 | Phf24
Description
PHD finger protein 24 [Source:RGD Symbol;Acc:1559864]
Coordinates
chr5:58377994-58381081:+
Coord C1 exon
chr5:58377994-58378179
Coord A exon
chr5:58378180-58381002
Coord C2 exon
chr5:58381003-58381081
Length
2823 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
3' ss Seq
CCACATTTACTTTCTTTCAGGAC
3' ss Score
9.96
Exon sequences
Seq C1 exon
GTTGTCAACGACGAGATGTGTGATATCTGTGAAGTCTGGACCGCTGAAAGCCTCTTCCCGTGCAGAGTCTGCACCAGGGTTTTCCACGATGGCTGCCTGCGCCGCATGGGCTACCTCCAAGGGGACAGTGCCGTGGAGGTGACCGAGATGGCCCACACCGAGACAGGCTGGAGCTGCTACTACTGT
Seq A exon
GTGAGTCTGGGCTGCAGGGCAGTGGGGAAACAGCATTCTTCCCAGAGGCCTCATCTGAAAAATGACTGTTTCTAAACAGCGACCTAAGGGGGTTTTCTAATAGTGCACGCAAGGGTCCTGGAGCTAGAAAATCAGTTCTTCATTGTGAGGTGCACTATATGGCACTTAAAAAAATATGCCAGGAGCACCTGGGCTCAGTTATGAGACACCAGACCTTGCCAATTGTGTTCCAGAGGGAGCAAAGCACCCTCGGTAAAGAATCAAATAAACAATGGGCCTAACCAATCAAATTAACTCTGCATAGGGCACTGCCTTCTCTAAAGGTCTGTGGCTGCCATTCCTTGCACTCATCGGAGAAACCAACCTGGCATCCTGAACAGTTGGCTTCCAGCAGAGGGAGATTCTGTTCCGGGAAAATACTTAGTCCTGTGGTCCTCGCTTGACCCGATGACTGTTAGAAGCCTTTGCTCTTCATCTCTGAAGTGATCATTATGTGAATTAAATAGCAACAGTGCATCGATTCAGGACTCTATATAAATGCCTTCCAACTTTTAATGGCAGAAAGAATCTAAGGTTCTGTTGAAAGCCAGGTTCGTAGCCATTGTTCATCATGCCTGAGTGGAATCCGGGTCTTTCCTTCCTGCTGTGCGGGTGTCTTCCCCACTCTGTGAGGAGCGGCTGGCGACTGTCTTCTTCCACCGTCCGCAGGGAGCAGACAGGTGCTACTTTCAGACTCCCCATCTCTGGCTTATTCACAAAGTGGAGCCCACCAGTTACTTCCAGCTACTGAAATACCTTCCCTGTAGAACAGACCACTCCAGCTCCGCTCTACAGTCTCTCCCTCCCCTTCTGCCCAACCCGTGCATGCACATACACTGCCACTGAACACAGCCTCTCCACTTGCAGCAACCCTGCTTACCAGTGCGCTGCCAGCATGAGCCTGGGTCAGTCCGTGTCTCTCTCCCGGGAAAGCTCTGCTTCCTCCCCAGCTCTGCTAGGGTCCAGCTGCCGCAGCCACCTCCGTGGGCCTTTTGCACGCACTTCCTCCAGGTTCATCCCTAGAGCATCTCGCTGTCTCCGGACTTCCCTACCCTCCAGTGTGACTTCTGCCTTCAGCCCCTTGTTGAGTTGGCTCCTACTGAGGTCATCAAAGATCTTCCGATTGTCAGGTCCAATGACTGTTCCTCGGACATCTTCTTAGTCAGCCCTTTTGAATAAAATATTTAACATTTCCTTCTTCCCTCCTCTTTCTCTTGGCAGTTAAGTATTTTCTAGAATTTATACAGTAGATGCAAACTAGAGAGACTGTTTCCAAATAATGAAATCCGGGATGCGTGTCTGACCACTGTTAGCACCTCCATGATGCTGCAGTCTTCACTTTGTACCCAGTACTCCCAGTCCCTTCCAGCCTTCTCCGACCGTTCTTTCTCCGCACCGTGATTTGTTCCAGTTCTAAATGCTGTGTTTCTTGGGATTCCATTGTCTTCCCACCGTATTCACTGTCTTTGAGGGGCTTCGTCCTATCTAAATATTAACAATACCCATATCTGTGCCCAGACTTAAATTTCCTGTCTCAGGGGCTTACCCATCTTGACGTCCCACCAGTACTTCATGCTCAGAATGCCCCGAAATGAACTGATTTTTCTGCCTAAACCTGCTCTTCCTCCTTGCTTCTGTAGAAGCACAGTAATCTCACTCACTGGTTTCCCAGTCCCGGCTCTTCCAGTCCCCTCACCCGTAAAGCAGCAGGTTCAGATGACCTCTGGCCTCTCTCGTTCCTTCCCCTTCCCCATTCTCTGAGTTTACCCCTTATTTTTTTCCACCCGGCTGTAGCAGGCGCCCAGCAGCTCTCCATTCCACCAGATACTCCTCTAATCCATTTTCCCACAGAAGTCAGAGATTGACTGTGACAATGGCCGCTCTGTGCCTCCTGATTGTCCTCAGAATGAAGGCCTGAGTTAAGGGGCTCGGTCGAGGCCATCTGAGGAGTCTTCATTTCTAGCTCTCCTTGATTCCCTTCACACTCTCGTGCAGCAGCCACACAGAGCACCAAACATCACTCCATGTGCCCGGCACTTGCCAGGTGCTCAAGGGGTGTTCACTGACACAGTCATAGGATTGTCTGCGAGTCTGCGAGTCTCATGACATGGCCCAGCCTGCTCCTGGCTGGTATTTTAGGAGGAAAGTTAACTAATCATTACAAAAACAAACAAACAAACAAAAAACCTTCAATAGTATTGCTAACAAAATAAAACCTCAATGTGTTTTAGTAATCAAACTTCTATGACGCCATAAAAATTCGTTTTGTTTAGGGACATTTCCAAACCATTCTTGAGCCATTTAAAGTTGCACAACAACTTTACATATCCCTAGAAGCAGGGATATTTGTTTTTTTATAGCTAAAATGTGCTTTAAGCCCAGCCACAAAGCCGGTGCACATACAATAAGCACACGCTGAGCGTCTGGTGGGTGCAGCTAGGACCCACAGCCAAGTACCCATCTCTCATCCGGCAGCCGCTCTGGGAGATGCCTCTGTGGCATCCATAGGTCAGCTCACAGGCTAACTCGAAAGCAGGTATTGGATAAAGAGACTGGGCCAGAGTCAGGATAGCTGGGTTCTAGGGGGGATTCGTCTCCAGAGTCACACAGCTCTAAGCAGACCTTCCCTCTTTCTGGAGCCTCGGTCTCCTGGACGGCGGCTGGGCGGTTGGGATCAGGTGATTTTTCCTCCTCTCTGGTGGAGATGCTCTTTCTATCCCTCTTAGCCCTTTTCACTTGTCACTGGCCTGTGTGGCCGCTAACTCCACATTTACTTTCTTTCAG
Seq C2 exon
GACAACCTCAACCTGCTGCTTACTGAGGAGGAGATGTACAGCCTCACGGAGACCTTTCAGCGGTGCAAAGTCATCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000129:ENSRNOT00000000141:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PD(91.3=67.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]