MmuINT0105100 @ mm10
Intron Retention
Gene
ENSMUSG00000036062 | Phf24
Description
PHD finger protein 24 [Source:MGI Symbol;Acc:MGI:2140712]
Coordinates
chr4:42934633-42937919:+
Coord C1 exon
chr4:42934633-42934818
Coord A exon
chr4:42934819-42937840
Coord C2 exon
chr4:42937841-42937919
Length
3022 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
3' ss Seq
TCCGCTTCTACTTTCTTCAGGAC
3' ss Score
9.64
Exon sequences
Seq C1 exon
GTTGTCAACGACGAGATGTGTGACGTCTGTGAAGTCTGGACCGCTGAGAGCCTCTTCCCATGCAGAGTCTGCACCAGGGTTTTCCACGATGGTTGCCTGCGCCGCATGGGCTACCTCCAAGGGGACAGTGCAGTGGAGGTGACTGAGATGGCCCATACAGAGACAGGCTGGAGCTGTTACTACTGT
Seq A exon
GTGAGTCTGGACTGCAGGACAGGGGGAAAACTCGGTGTTCATCCCAGAGAAACTCTTAAAAGTGACTGTTTCTAAGTAGTGACCTAAGGGGCTTTTCTAATAGTGCATGCAAGGGTCCTGGAGCTAGAGGTGCAGTATATGGCACTTTTAAAACATGCCAGTAGCAAACAGGCCCAGTTGTAACACAGCAGACCTTGCCAAGTATGTTCCAGAGGGAGCAAGCCACCCTCGGTTAAGAATCATAAAAAGAACAGGCCTAACCTATCACTAGTCATTCTGCATGGGGCAGTGCTTTCTCTACAAGCCTGTGCCTGCCATTCCTTGTACTCATCTGAGAAACCAACCTGGCATCCTGAACAGCTCGCTTCCAGCAGAGGGAGATTCTGTTCCGGGAAAATACTTAGTCCCATGGTCCTCGCTTGACCTGCCGCCTGTTAGAAGCCTTTGTTCTTCGCCTCTGAAGTAATCATTATGTGAATTAAAGAGCAACACTGCATTGATTCAGAACTCTGAAAACCATATATAAATACCTTCCAACTTCTAATGGCAGAAAGAGTCTAAGGTTTCTGCTGAAAGCCGGATTCATAGCCATTTATCATCATGCCTGCGTGGAATCCAGGACTTCCCTGCCTGCTGTGCGGATGTCTTCCCTACTCTCTGGTTCGGTGTAAGGAGCAGCTGGCAACTGTCTTCTTCCACTGTCTGCAGAAAGCAGATAGGTGCTACTTTCTGACTCTCCATCTATGGCTAATCCACAAAATGAAGCCTACAAGTGACTTCCAGCTCCCGAAATACCTTCCCTGTAGAATATGCCACACCAGACTCTGTGCTACAGTCTTTCCCTCCACTTCTGCCCCAGTCTGTACACACACGCACACGCACGCACGCATGCACGCACGCACGCTTGCCAGTACGCTGCCAGCATGAGCCTGGGTCAATCTGTGTCCCTCTTCTGTCTCTCGGGCACTCTCTGCTTCCTTCCCAGCTCGCTAGGGGCCAGCTGCTGCCACCACCTCCACGGGCCTTTTGCACACCCTTCCTTCCAGTTCATCCCTTTCTTTTCCCTCCACTCACAATCACACTTCTTAAGAGCGTTTCACAGCCTCCTGACTTCTCTGCCCTGCAGTGTGACCTCGGCCGTCAGCACTTTGTTGAGTTGGCTTGTGTTGAGCCCACCGACAATCTTCTGTTTCTCAGGCATCTTCTTAGTCAGTCTTTTTCCTTGTTTCCTCCTCTTTCTCCTGGCAGTTAGGTATTTTCTAGAATTTATACAATATATGCAAGCTAGAGAAAGTGTTTCCAAATAACGAATCCCCGGATGCGTGTCTGACCAGTGCTAGCACCGCCCACTATGCCATGCCACAGCTATGCTATGCCATGCCCAGTCTTCGCTTGGTACCCAGTACTCCCAAGGGTCTTCCAGCCTTCTCTGACCTCTCCTCCGCACCCGTGGTTTGTTCCAGTTCTAGATGCTGTCTGTATTCCTCAGGATTCCATTGTCTTTCCCACTGTATTCGTTGTCTTCGAGTGACTTTGTCCTATAACCTACAATCAAATTATTAACGATGCCCGTATCGGTGCCCAGACTTAAATTTCCTGTCTCAGGGGCTTATCCATCTTGATGTCTCACCAGTACTTCATGCTCAGAATGTACCGAAATGAACTGATGTCCCTGCCTAAGCCTGCTCTTTCTCCATTCCTTTCTTCTGTGAGCAGTAGTATCTATCATTCCCCAGTTTCCCACCCCCCACTCTTCCGGTACCCTCCCTCATCCCCCACTGCCGGTACCCTCCCTCATCCTCCACTGCCTGTACCCTCCCTCATCCCCCACTGCCTGTACCCTCCCTCATCCCCCACTGCCGGTACCCTCCCTCATCCCCCACTGCCTGTACCCTCCCTCATCCCCCACTGCCTGTACCCTCCCTCATCCCCCACTGCCTGTACCCTCCCTCATCCCCCACTGCCGGTACATCAGCAGGTTCAATGACCTCTGACACCTCTCGCTTCTTCCCTCCCCTGTCCGCTGGGTTTAGCCACCTGCTTTTTCTTACCTGTGCCTCTGGAACAGCACCCAGCGGCGATCCATACCACCAGATTTTGCTCTTCTAATCTGACCATGACAGCTGCCCCTCTGTGCCTCCTCAATGTCCTTAGAGTAAAAGGTCTGAGTTACGGGGCCCCGTCAAGGCCATCTGAGGAGTGTCACAATTCTTCATTTCGAGTTCTCCCCGATTGCCTTCACACTCACATGCAGCAGCCACACAGTACCAAACATCCCAGTGCTGTGCACACTCATGTGCCCAGGACACGCCAGGCGCTCGGTGACAGAACCATAGGATTGCTTGTGAAACTCACGCCATGTCTGAGTCTGCTCCTGGCTGCTATTTTAGGAGGAAAGTTAACTAATCATTACAAAGAACCTTCAATAGTAATGCTAACAAAATAAGACCTCAATGCTGCTTTAGTAATTAAACTCCTATGACACCATAAAAATTGGTTTTGTTTAGGGACATTTCAAAACCCATTCTTGAGCCATTTAAAGTTGCACAACCCACTAGAAGCAGGGCTATTTGTTTTTTATAACTAAAATGTGCTTTAAGCCTGGCCACAAAGCCAGTGGACATAAAATAAACACATACTGAGCAGCTGATGGGTGGAGCTAGGACCTACAGCTGAGTACCTGTCTCTCTTTACACCCACAGCAGCTTTGGGGGTTGCTTCTGTGGCATCCCTAGGGCAGTTCACAGGCTAACTTGGAAGCAGGTATTGAATAAAGAGACTGGACTAGAGCCAGGATAGCTGGATTTTAGGGGGGTGGGGTTCATCCCTAGAGTCACTCAGCTCCAAGCAGATCTTCCCTCTGTCTGGCGCCCCAGTCTCCTTGACAGTGGCTGGGTGGTTGGGATCGTGGGTTTTACCTCCTCTCTGGTGGAGGTGCTGTTTCCGTCTCTCTTGATCCTTAGCGTTTCCCTTGTCACTGGCCTGTGTGGCCACTAGCTAACTCCGCTTCTACTTTCTTCAG
Seq C2 exon
GACAACCTTAACCTGCTGCTTACTGAGGAGGAGATGTATAGCCTTACTGAGACCTTTCAGCGGTGTAAAGTCATCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036062:ENSMUST00000107976:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=WD(100=69.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types