HsaINT0086388 @ hg38
Intron Retention
Gene
ENSG00000122733 | PHF24
Description
PHD finger protein 24 [Source:HGNC Symbol;Acc:HGNC:29180]
Coordinates
chr9:34972346-34976230:+
Coord C1 exon
chr9:34972346-34972531
Coord A exon
chr9:34972532-34976151
Coord C2 exon
chr9:34976152-34976230
Length
3620 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
3' ss Seq
CAGCTCTTCCTTATTTTCAGGAC
3' ss Score
8.61
Exon sequences
Seq C1 exon
GTTGTCAACGATGAGATGTGTGATGTTTGTGAGGTCTGGACAGCTGAGAGCCTCTTCCCGTGCAGGGTCTGCACCAGGGTTTTCCATGATGGCTGCCTGCGCCGCATGGGCTACATCCAAGGAGACAGTGCAGCGGAGGTGACGGAGATGGCCCACACAGAAACAGGCTGGAGCTGCCACTACTGT
Seq A exon
GTAAGTCTGGACTGCAGGGACAGCAGAGGACTTGGCACTTTTCCTGGAGGCCCGGTCTTAGAACACTTGATTTTAGGCAGTGACCTAAAGAATTTTCCAATGGGCTGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCAGTGCCGGAAGATCACGAGGTCAAGAGATTGAGACCATCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGGCGTGGTGGCACGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTAGGAGAATCACTTAAACCCAGGAGGCGGAGGTTGCAGCGAGCCGAAATCGCGCCACTGCACTCCAGCCTGGCGACAGAGCGAGACTCTGTCTCGAAAAAAAAAAAAAAAAAAAGATTTTTCCAATGGTACATACAAGAGACCTAGAGCTAGGATGGGGTTTCTCAACCTCAGTACATTTTAGGCTGGCTAGTTACTTGTTTGAGGGGCCAAGTGCATTGTAGGATGTTTAGCGGCACCCTGGCCTTAATCCCCTAGATGCCGGTAGCATACATCTCAATGTGAAGGTAGCAAAATCACCCCCGGTAGAGAACCTCTGAGCTAGGAGATTGACTGGGGCCTAATTACTCAAAAGTAATTCTGCTTGGAGCAGTTCTTTCTCTAATAGTCTATAGTTGTCATTCATTGTATCCATATGAAAACTAACCTGAGATCCTAACCAGCTTGCTTCCAGTAGGGGTAGATTCTATCACAGGAAAACTTCCTAGGCCTGAGATCCTCACTCAGCCTGCCACCTGACTCATAAGCATTTGCTCTTCCTCTTTGAAGTGGTTATTATGTGAATTAAATGACAAAGCTCTATTGATTCAGAACTTCGCAAATTATATATAAATGCCTTCTAACTTTTAATGAAGGACAGAGTCTAAGGTTTCCATTGAAAGCCAGATTTATATCCATTTCTCACTACACCTGAATAGAGTTCAAGTCTTGCCTTATTGATCTGTTGTCCTGCAGATATCGTCATTGTTTATTGATTTCAGAGTGAGGAGCACCTGCTGATCCCCCCTTCTTCCTGCTGCTTAGACGAAAGCAGAGATGTGCCACTTTCTAACAAATAACTCTTCCTCTATGGCTTGTTATGGAACAGCTATTTTCAGCCACTGAAACACCTGTCCCCATGGAGTACACTGCAGCAGACCCTGCTGTACCGGCGACCTTCTCTAGTGCCTGTCACCCCTTCCAAATGCCATCCTTTCATCTCGGCCACTCTGCTTTGCGGTGTGCTGCTGCTATAGGACTGGGGTGAAGGGGTCACCTCCCTAACCCCCAGGAACACACTGCTCCCTCCCCAGCTTCCTGACACAGTCCTACCATCATTGCCACCATGCTCCACTGGGCTTTTTACAGAGCCTCCTTCCAAGTACCTCTCCTTTCTTTCCTTCCCTTCACAGCCAACAAATCTTCTTCTTCTTTTTTTTCTTTTTATGAGACAGGGTCTCACTGTGTCACCTGGCTGAAGTGCAGTGGTGCGATCGTAGCACTGCAGCCTTGAACTCCTAGACCTAAGCAATCCTCCTGCCTCAGCTTCCTCAGTAGCTGGGACTACAGGCACAAGCCATTGCACCTGGCCCCACAGCCAAACTTCTTAAAAGAATTTCACCATCTCCTATGGTTTTTCAACCACCTATCATATAATCTGACATCTGCATCCATCATTCTGCAGAACTGTTGCTTCCTAAGGTCACCAGTCACCTCCTAATTGTCAAGTCCACTGACCTTTTCTGAGGCATCTTCTTACTTGATCTCTCTGAAGTATTTATTACTTCTTTATTCCTCTCTCTTTTCTTTAGGATTTAAGTATTTTTATGAGAATTATTGCATAAGATATGGAAATGAGAGAAAATAGAAAGTCAATAAAATCCCACCTCAGTGGTGTAACCACCGTTAACATTACCTCCCACATTCTGCAGCTGTCTTTGCTTGGTATCCAGTACCTTCTTCTCTACTGATGCTCTTCCAGCCTTAGTCTCTGACCATTCTTTCTCAATGCCCTTTGTTAGTTTCTTGTCTCAGTCCTGTTTCTCAGGGTTCTGTTGTTTAATACTCTTCTTTTCTCACTGCGCCCTCTTTGGTGACTTCATCTACAGCCACCATCTAAACACTAATGACTCCTATTTCTGTGTGTCCAGACCTAAATTTCCTGTCTCTTGCACTTATCCACCTTGATATCTCACAAGTACTTCACACTCATCATGCCCCAAAATGAACTCATCTTTGCCCCCAAACCTGCTCTTCCTCCACTCCTTATCTCTGTGAATAGTAATACCATGCCCCAGTTACCAATTCCAGTTCAATCTCTCCCTCATGCCTCACATCCAGTGAGTCATCAGGTCCTGATGATGCTGCCTCTAATATCTCTCTTCCCTTCTTCATTCTCATGTCTCAGTTTAGCTGCTCATCATTTCTTGCCTGGACTGTTGCGGCAGCCCCCAACTGCTCTCCACACCTCCAGACTCTGCCGCTCTAATCCATCTTCCACACAGCAGCCAGAGATCTGACCACGGCACTCCCCACTTGAAAACCCTTTGGTGGCTCCCTTTTGCCCTCAGAATAAAGGCCTAATTTGAGGGGCTCGATAAAGGGTATTGGAGGTACTTCATAGTAGGCCCCCTCCTTCCCTCACACACACACTCACATGTACTCCAAACCTCAGCCACACTGAACATCTCACAGTGTTACACACCACTGTGGCGCCCAGTGTTTACTAGGTGCTCAGTAGGTGTTTATTGAAAGTATGGTTTGAAAGAAAAATACAACTATTATATATTAGTTTTTAAAAAGTGTTATGGAAGAAAAAGAATGGTTTGAGTTCTTTATGAAATCCACGTATGAATACTCATGAAATATCTGCTCTTGTACTTTGCGGGTATCTCAGAGGAAGAAAATGACCTTGTACTAGAAAGGATCTTTGATAGTTTAAAGACTGTATGGTAACGTCAACACAATAAGATATTGGTGCTCCTTTGGAATTAAAACTTCTGTGGCACTACAAAAAAACTCATTTGGCTTTAGGAGCCTTGTAATAATGGCATCTTTTAAAACCATTCTGGGGTTATTTAAAGTGATACAACCCACTTGGAGCAGAGCTAGGATTAAACTTTTTTTTTTTTTAACTAAAATACATTTTTAGCACAGCCTAACACAGAAGCCAAGTAGATAAAAGGGATGGAGATGGAGCCGCTCTGCTTGATGGAGATAGGGATTCACAACCTGCCTACTCACTAGCCCCCTTATTCCCTGCAGCAGCTTCCTAAGGCACTTCCAAGAAATCCCTAGGTTAGCTCAGAGGAGAAAACCACTGTTTTAGTAAAGGGACTCAGTGCTGGAGTCAGGATATCTGGGTTCTTGGGGAAGATTCTGCCCCAGAGTAAAGACAACTCTGGCCAAGTCCTTTCTCCTCTCTGGGGCCTCAATCTCATTGATTGTGAATAGGAGGCTGGGATTAGATGATCTTGGAACTGCTTTCCAGTTGAAATTCTATTTCTAGCCCCCTTGACCCTGGCCTTTCTTACTGGCCTGTATGGCCACCGACTCAGCTCTTCCTTATTTTCAG
Seq C2 exon
GACAACATCAACTTGCTGCTTACTGAGGAGGAAATGTATAGCCTCACGGAGACCTTTCAGCGGTGTAAAGTCATCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122733:ENST00000242315:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development