BtaINT0082153 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002280 | KIF5B
Description
kinesin family member 5B [Source:HGNC Symbol;Acc:HGNC:6324]
Coordinates
chr13:33636504-33637134:+
Coord C1 exon
chr13:33636504-33636552
Coord A exon
chr13:33636553-33637078
Coord C2 exon
chr13:33637079-33637134
Length
526 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TATTTATTTTTCTTTTTCAGTTT
3' ss Score
11.2
Exon sequences
Seq C1 exon
GTTTCATATTTTGAAATTTATTTGGATAAGATAAGGGACCTGTTAGATG
Seq A exon
GTAAGTTAAGTTCTTGCTCTTCGATGTTACTGTTTTTAGTTGTAAATGTGAGACCATTTCTCAATAACCTATATGAAACTGACTTGAATTACAGGAAACATTGAAAAATGCTTCTTTCAAAGTTTTAATTTAATCCATTTTAACTTATTTAAAGCATATATTTGTGGGTGCTTCATAGGTAGTAATCAGACAATTGGACTGGAGTTCCAGAGCCTGAGTCTTATGCTCTTGTCTTTTCTCAGCTGTCAGACACATTGTCCTTGGCAAACCACAGAACCAGTCTCACTTAGTGTTCTTATTTTCAGAATATGAGAGGCAGAGGTTGGCCTGGACCTAAAATTCTATGTCTCTATATAAGTCTTACTTCTCTATAGGCTCTTGCTTTTGCAGTGATATTTTCATGTTTTTTTAAATTCAGTGTTATTGGGCTTCATGGGGAGAGAAACAAGAAACAATTGAATTAACTATTTCACAGCCAGTGTTAGCAGTTAGGAAAATGTTAATATTATTTATTTTTCTTTTTCAG
Seq C2 exon
TTTCAAAGACCAATCTTTCAGTTCATGAAGATAAAAATCGAGTTCCTTATGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002280:ENSBTAT00000033899:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0022518=Kinesin=FE(5.1=100)
A:
NA
C2:
PF0022518=Kinesin=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development