MmuINT0087327 @ mm10
Intron Retention
Gene
ENSMUSG00000006740 | Kif5b
Description
kinesin family member 5B [Source:MGI Symbol;Acc:MGI:1098268]
Coordinates
chr18:6225768-6226430:-
Coord C1 exon
chr18:6226382-6226430
Coord A exon
chr18:6225824-6226381
Coord C2 exon
chr18:6225768-6225823
Length
558 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TGTAACATTTTTTTTTTCAGTTT
3' ss Score
9.61
Exon sequences
Seq C1 exon
GTTTCATATTTTGAAATATATTTGGATAAGATAAGGGACTTGTTAGATG
Seq A exon
GTAAGTTAAATTCTTGCTTTAATAATTTCAGTAGTACCTGTTGCTCTTCTAGTATTAAATGTTCTTAGTAACATAGATAAATTTCGTAAAGTGATAACGTTATACATAGGATAACTTAATAGCATATGTATACTATTTTTAAAGTCAAGCGACATTTATTAAGAACTGAAGGATTAGCTCCTTGTTGCTGGGAGGGATTGTGAACCTGGGATGCCATCATATTGCCACTTCTTAAGTGATAATGAGGGCTTTAAACTAAGAGTTGTAGAGCTTAAGCCCAAAGTGTTAGTCCCAGTTGTTCAATGCATTGTCCTTCCCTTGGGCCTAATGTTATTTAGAAAATGGGAGTGGTAGAAGTTTGAAATTTCTGTTTTGTTTTTTTAACATTAGTTTCTAGATTATTCTCCTAGTATGTTTACAACACTTTGCTTTTTTTATAGTAATGCATATATGTATAAAATATATATTTTAAAAGTTCTAAGGTTGGGCTGCTAAGGGAAACCTACCACTTACATTAGTTATTTTATAACTGATATAATGTAACATTTTTTTTTTCAG
Seq C2 exon
TTTCAAAGACTAACCTTTCAGTCCATGAAGACAAAAACCGTGTTCCCTATGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006740:ENSMUST00000025083:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0022518=Kinesin=FE(5.1=100)
A:
NA
C2:
PF0022518=Kinesin=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types