HsaINT0088136 @ hg19
Intron Retention
Gene
ENSG00000170759 | KIF5B
Description
kinesin family member 5B [Source:HGNC Symbol;Acc:6324]
Coordinates
chr10:32327091-32327754:-
Coord C1 exon
chr10:32327706-32327754
Coord A exon
chr10:32327147-32327705
Coord C2 exon
chr10:32327091-32327146
Length
559 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
CATTTGTTTTTCTTTCTCAGTTT
3' ss Score
9.52
Exon sequences
Seq C1 exon
GTTTCATATTTTGAAATATATTTGGATAAGATAAGGGACCTGTTAGATG
Seq A exon
GTAAGTTAAATTCTTGCTAATCAGTTTTAAATAACATCTGTTAATTCCTTTTTAATAATAGATGTGAGACTATTTCTTTGTAACCTATATGAAATTGTCTTAAGTTATTGGAAATAGACAAAATTTTTTTTCTTCTAAAGTTTTAGTTGAATACCTTTAAATAGAATAACTAGTTTAAAGCGATGTTTATGGGTACTTCTTAGTAGTAATTAGAGCATTGGACTGGGAGTTACATAATCTGAGCCCTGAGTTCTAGTCTTCTGTCAACTGTCAATTAGATACATTGTCCTTAGGCAAATCATTGAACCATTCAGGGTTAATGTTCTTGTTTATAAAATGTGGGTGGTAGGTTGGAGTGGTCCTAAAATTCTATATTGTTGCATTGGTTTCTATTTACATCTCCTGCTGTGTCTGTAAGGTCTGCTTTAGAGCAATGTTTTAATATGTTTTTAGAGTTCAACTATTGCTGTTAGGCTGCTCAGGAAAGCCTATCAGTTATTTCATATCCAGTGTTAAGAGTTTTAGGAGAATGTTGCTAACATTTGTTTTTCTTTCTCAG
Seq C2 exon
TTTCAAAGACCAACCTTTCAGTTCATGAAGACAAAAACCGAGTTCCCTATGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170759-KIF5B:NM_004521:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0022518=Kinesin=FE(5.1=100)
A:
NA
C2:
PF0022518=Kinesin=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)