GgaINT0101228 @ galGal4
Intron Retention
Gene
ENSGALG00000007215 | KIF5B
Description
kinesin family member 5B [Source:HGNC Symbol;Acc:HGNC:6324]
Coordinates
chr2:14145517-14145909:+
Coord C1 exon
chr2:14145517-14145565
Coord A exon
chr2:14145566-14145853
Coord C2 exon
chr2:14145854-14145909
Length
288 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
TAGAACTTTTTCTCTTCTAGTTT
3' ss Score
8.33
Exon sequences
Seq C1 exon
GTGTCATATTTTGAAATATACTTGGATAAAATAAGGGACCTTTTGGATG
Seq A exon
GTAAGTCTCTTATTTACTTTGAGCATAGGAAGTAAACTGCTTGGTAGAGAGATGTATAGAACAAAAGCTTTAAGATAACACTGAGAGAAATGTGTTATGTTAATAAGTAACCCATCTCTGATACAGATACGTAAAAATGAGACAGCGTGTTGCTAATCTATATAATAAAGCTGTAACTGCAGTAGTGGTCGTTTGATGTATGTTCCATTTTTACTTGGATCTGTTGTGAATGTCTCATTCTGTGAAGAAATCATACATACCTTAGCTTTAGAACTTTTTCTCTTCTAG
Seq C2 exon
TTTCAAAGACCAATCTTTCTGTTCATGAAGACAAAAATAGAGTTCCCTATGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007215:ENSGALT00000011680:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0022518=Kinesin=FE(5.1=100)
A:
NA
C2:
PF0022518=Kinesin=FE(5.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]