BtaINT0082168 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018125 | KIF5C
Description
kinesin family member 5C [Source:HGNC Symbol;Acc:HGNC:6325]
Coordinates
chr2:47341488-47343663:-
Coord C1 exon
chr2:47343554-47343663
Coord A exon
chr2:47341590-47343553
Coord C2 exon
chr2:47341488-47341589
Length
1964 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
3' ss Seq
GCTGTTTCCTCTCATTTCAGTTT
3' ss Score
9.36
Exon sequences
Seq C1 exon
AAGGCTCTGGAGCAGCAGATGGAGAGTCACCGGGAAGCTCATCAGAAGCAGCTGTCCAGACTCCGGGATGAAATTGAGGAGAAGCAGAAAATCATCGATGAGATTCGGGA
Seq A exon
GTGAGTTGCCCCAGGGGACTCGCAGGGCATGGAGGCGGGCACAGGCCTTGTGCCAGCCTGGAGGGACATAGCGTCTAGCCCAGGTCTCTGCTTTCCCTGCCCTGTGGGCGCTGGGCTCCGCCCTGGTGTCACAGGAAGCTGGGTTGTGATGCTTCTGAGGTCTGTTCCTCATCTGGAGTCCAACCTCTGGGGGCTCTGGTGGGCAGGTGGCAGGTTGGCCCAGCTGCCCTGCCTGGTGCCCTGCAGAGCAGGACACATTGGTGACTCACATGGACAGACATGTGCCCCTGTAGGTGGGGATGAGTTCCTATGAGAGTGTGAAAAAAACTGATTTGGTCCGACTCGGGGGATCTGCTGGGTTAATAAATGCTCCAGAGGAGACTGTCAGCTCCTGCTGCCTCCTCGACCAACACATACCTGTGTCTGTACAACCTGGAGCCACCAGGTCACACGTGGACTCTTAGGGACCCACGCTGTTGTGTGTCTGCGCTCGAGGACATCATTGCAGCTGGGCTCCAGTGACACCTTCTCAAGGCCATTCTATTGCAGCTGCTGCTGAACACCCCCCTTCTCAGTAACGACCCCTCCCCACTCCTCTCACCTTCCCATATCATCAACACAAGTCCCCAGGCTGAGAGGCACCTTTAGGATCCTCTCCTGAGGATTCTTATCATTTTTGCACAGTGAGTCCCTTTGCAGAACAATGTGTTTGCGTGTCTCAAATAAAAGAAGAAAACAAAGAAAACCAGTTATATTGAAATATATTGAAATACAGTTCATTCCATGCCCCCATGTCCTCCGCCCCAGTCTAGACTAAAGGCTCCCTCCTTTCTGTTTTTATATAGATGAAGAAACAAGATTTCTATACAGAATCAAAGCTAAATGATTTCCTTAAGGTCATACTGTTAAACAGGAATCAAACTGGAGTTGGAGTTATTCTCCAGACTACTGATCCAAATCTCTTTGCTTGTATCGCACATTTGCATTTTAAAAGCAAAAGTGTAAATGACGCCATGGGTAGACTCTGTGCAGTCTGCCTAGGAAAGCACTTAGCACTGTCTCTCTCCTTTCGGGCCACCCCATGCTCCCTCTCAGGTTGTGCCTTCGCCTGTAAGCACGGCTTTTATTTGTTATTCTGGTGCTGCTGCTGCTAAGTCACTTCAGTCGTGTCCGACTCTGTGTGAGCCCATAGACGGCAGCCCACCAGGCTCCCCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATGCCCTCCTCCAGGGGATCTCCCCAACCCAGGGATCCAGACTGCGCCTCTTATATCTCCTGCATTGGCAGGTGGATTCTTTACCACTAGCACTACCTGGCAAGGACTGAGGTACATAAAATGACCCAGCGTTCCCATCCAGGTGGTGAGTTTCTTTTTTGCAGCAGCCCAGACTTACTTTGTGTATCCTCTCTCTGACCACTGCCCCGCTTCCCCCTCCTCCCCCACCCAAAGACCTCACAGAGCAGAATGGTCCCTATGTCAGCCAGGGAGTTGGACTTGGGAGATGTTTTCAGAGCACCAGACCAGAGAGGAAGGGAAGGTCAGAGTAGCCAGATGAGGTTCCAGGAGTGCATGCGTACCATCTGTGGGGCAGAAAAAGAATTCTTACTGGGCTCTCTTTTCCTGTTTTAAAATTTTGGCCCCTTTCCCATTTCATTTTTTTTCCTTTCCAGAGCTCTTGCATAAGCCAGCTATAAATACATTCTTAAAGCCTTATGTTTCATGCCTCTTAGATGTTCCCAGAAATTAGTTTTCACTTGGGCAGGGAGGAAGCTGTGAGGTTGTTCTCTGATCTCTCAAAATCCCCCAGAATTGTCACCTTTATTGCACAGAGCTAATGGGCTTGGAACAGAATTATGTCTTCAGTCGCATGACTCAGACTCTCAGGGTGATGTGGAATGCGTTGCTGTTTCCTCTCATTTCAG
Seq C2 exon
TTTGAATCAGAAACTGCAACTAGAACAGGAGAAGCTCAGTTCTGATTATAACAAGCTGAAAATAGAGGACCAAGAGAGAGAAATGAAACTGGAAAAGCTCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018125:ENSBTAT00000024127:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.568 A=NA C2=0.100
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAGCAGCAGATGGAGAG
R:
AGAGCTTTTCCAGTTTCATTTCTCT
Band lengths:
206-2170
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]