DreINT0086536 @ danRer10
Intron Retention
Gene
ENSDARG00000076027 | kif5c
Description
kinesin family member 5C [Source:ZFIN;Acc:ZDB-GENE-081105-14]
Coordinates
chr9:23377105-23377461:-
Coord C1 exon
chr9:23377352-23377461
Coord A exon
chr9:23377207-23377351
Coord C2 exon
chr9:23377105-23377206
Length
145 bp
Sequences
Splice sites
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
3' ss Seq
TTTTTGCCATGTGATGACAGTGT
3' ss Score
2.69
Exon sequences
Seq C1 exon
AAAGCCCTGGAGCAGCAGATGGAAAGCCACAGAGAGACTCATCAGAAGCAGCTTTCACGTCTGCGGGATGAGATCGAGGAGAAACAGAGGATACTAGATGAGCTAAAGGA
Seq A exon
GTAAGTGCTTTTTAGTTTAAAACACAATATTAATTTTGAACATTCACTTTTGGGAAAATCTGCTCATGCCTGGCCTTAATCAAAATAAACCAAGACCCATTAAAACGGTTTGATGCATTCAGTATTTTTTGCCATGTGATGACAG
Seq C2 exon
TGTGAACCAGGCTCTTGAACTTGAACAGAAGAAGCTCATGTCTGACTACGAGAAGCTCCAACAGGAGGACCAGAAGAAGGACGAAAGGCTACAGAAGCTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076027:ENSDART00000083567:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.649 A=NA C2=0.371
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAGCAGCAGATGGAAAG
R:
GCTTCTGTAGCCTTTCGTCCT
Band lengths:
203-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]