GgaINT0045232 @ galGal3
Intron Retention
Gene
ENSGALG00000012462 | Q6V1L3_CHICK
Description
NA
Coordinates
chr7:36453577-36454409:+
Coord C1 exon
chr7:36453577-36453686
Coord A exon
chr7:36453687-36454307
Coord C2 exon
chr7:36454308-36454409
Length
621 bp
Sequences
Splice sites
5' ss Seq
AGAGTATGT
5' ss Score
5.66
3' ss Seq
GTTTTTTCTTTTCATTCTAGTAT
3' ss Score
8.89
Exon sequences
Seq C1 exon
AAGGCACTGGAGCAGCAGATGGAGAGTCACAGGGAAGCCCATCAGAAGCAGCTGTCCAGGCTGAGAGATGAAATTGAAGAGAAGCAGAAAACAATCGATGAAATCAGAGA
Seq A exon
GTATGTTCACTCACTGTCACTTTTTGTGCTCCTCTACTGCTCTGTGACACTACAGGACTGTTTTTTTTTTCTGGTTGGTCTTATTAGTTTTAACTGATATCTCTGTACTTCAGAGTCTTAGGGAAAGTAGTATCCTTACATGCAGCAGCTATGTCACAGTCTCTAGTGTATCTCATTTTCACATTTGTGGTATTTCTTTGTGACACAGGAATATAACTGCTAGGTACACCCCTGCTTGGAAGGGTTTTAACGTTTCTTTTTACTGTTGTGCTCTTGTTTTTGGAGTGTTCATAAAATCTGAGCAATCCTGATGTAGCACTCCTGTCCATATTTATAATGTGGGTAAGTATTAGGAGGGAAATGAGAAAGCAGAGCAGAAAGAATGCAAGAACAGCGTGTCCTTTAAGATAAGACAAACAAGGCAGGGGAGTATATGGCTGACTGTTGAGTATTCCAGTATTTTAAAATAAAAGCTATTGGTTTTCAGATTCATTAGCCTTAATTTCTTCCAGAATTTTACAGTAGGATTACTTAGTTTTGTTTATGGACACTGAACTGCATATTTATGGCCTTCAGGACTGAGCCATTCAGACCTTTTGTTGTTTTTTCTTTTCATTCTAG
Seq C2 exon
TATGAATCAGAAGCTGCAACTGGAACAAGAGAAGCTGAGTGCTGATTATGATAAATTAAAAATTGAGGACCAGGAGAGAGAAATGAAACTGGAAAAGCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012462:ENSGALT00000037795:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.828 A=NA C2=0.324
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF041569=IncA=FE(23.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGAGCAGCAGATGGAGAG
R:
TGAGCTTTTCCAGTTTCATTTCTCT
Band lengths:
206-827
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]