MmuINT0087342 @ mm10
Intron Retention
Gene
ENSMUSG00000026764 | Kif5c
Description
kinesin family member 5C [Source:MGI Symbol;Acc:MGI:1098269]
Coordinates
chr2:49741939-49744466:+
Coord C1 exon
chr2:49741939-49742048
Coord A exon
chr2:49742049-49744364
Coord C2 exon
chr2:49744365-49744466
Length
2316 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
3' ss Seq
CTTTTTCCTCTCAATTTCAGTTT
3' ss Score
10.94
Exon sequences
Seq C1 exon
AAAGCTCTGGAGCAGCAGATGGAGAGCCACCGGGAAGCGCACCAAAAGCAGCTGTCCAGACTTCGCGATGAGATTGAGGAGAAGCAGAGAATCATTGATGAGATCCGGGA
Seq A exon
GTGAGTTGGCTGGGGGGCTCATGGGATACGGGCGGGCACGGGCAAGCCTTGGGTGGCAGACTTAAAGGACATGGCTTTTGGCCAGGGCCCCTCGTCTCTGTGCTTGGACTCTGTGTGCTGCCTCTGAGGTCTGTTCTCCCATCTGGAGCCCAGCCCCACCCCCGCCCCCAATGCTCTGGTACAGCAGGTGGCATGCAAAGCCAGCTGCCCCTTCATATCAATCCAGCCAGTTCAGGGGTGACTCAGCTTGGAAGATACACACCCAGGAGCTGGAAAGACTAAATGAATGTATGAAGAAAAAAAAAAAAAGCCCAAACAAAAAAACCACAAGACTATTCCTCCTCCAGGAATTAACAAACACTCCAGAGAAGCTGTTTGGCTTTGTTGCCTCTTCAGCCCAACAGATTATGCACCTGTAGCCACCTGGTCACCTGTGTGCACATCTCAAAGACCTGTGCCAGTATGAGTCTGTGCGTGATAGATGGCAATATACCCTTCCCGCTGCTATCAGGATGACATCATTGCAACTTAACTCTGGATGCTGCCTTGTGACCACATCCTGCCTTCTCAGAGTCCTTGGGGAGCCCCCCTGCTCCACAGTACCCTTTCCTTTTCTGTAGCACAAGTCCCCCGGTTACAAAGCTTGCTTATGGGGGGGGATCTTATTCTGGGGTTCATTATGCTCTTTACATAGTAGATCTTCTTGGCAGTCTCTGAACCCCTTTGCAGAACAGCCTTTTAAATGCTCCCCTAAAAAGCATACTACTATAAAGAAAATATGTATACTGAAATAGAATTTCACCCACTGCCCCTCCCTCCCCAACTAGGGCAAGACCCTCTCCATTACCCCTCCCACCACCCTCCCACCATCACCACTGCTTCTTTCTATAGATGAAGAATTAGATATAGGAAGCAAGGTTGAATTATTTACTTAAGGTCACACGGCTAAATAGGAATCAGACTGGAGCTAAGCGTTTAATTCTCCAGGCTACTGATCCAAATCTTTTCAGAGTATGTGAGCTGCTTGCAAGAGCATTTGCATCTTGAAGAAGAGGAGGAGGGAAGCAGGAGTCTAGCTGGTGTGCTAGCTCTGTGCAGCCTGTCTGAGGACAGGCCTCTGCCTGCTCTGTCCCCACCCCTTCTGCGCCTTCCTATTCCAACACCCCTTGAGCTTCTCCTGGACACAATTCTGATTAATATTCCTCAAGACATTGTTCTGAAAGAGAAGGAAAGAGAGAAAGGGAGATAGCGAGAACATAATATAAGTCAGTGCATGAGTTCCTTGTGGGAGCTTTCTAGACTTGGGCTCTTGGTGCTTCTGGCTTCCTTCACACAGTCTTGTGGTCTCAGCCTCTCGGAGGGCTTTATGAGCACTGGCGTGAGGCAGAAGTGGAATAGACCCTCCTGTCTTAGAATTTCTGTTGCTGGAGAAAACACCATGACCAACAGCAACTTGTGGAGGAAAGGATTTATTTCGAGTTAAGCAGTTGACAGTTATCATCCAGGGAAGTGAGGACAGGAACTTAGGGCAGAGGCTCTGCAGGGCTGCTGCTTACTGCCTTGCTCCTCATGGCTTGCTCAGCCTGCGTTCTTACAGCACCCAGTACCACCAGCCCTGGGATGGCACCTCTTCGGAGAGCTTGTTCCTTCCATAGCATTCATCAATAACAATAAAATACTGCAGACTTGCCTTCAGGCAGATCTTGTGACAGCAGTTCCTCAATTGAGAGCCCTCCTTCCCAAATGACTTCAGCTCATGTCAGATTGACATAAATTTGACCAGCACAGCCAGATGCTGACTTTCTGTCTCCACAAAACCGTACTCCAAGGGCTGCCCCATGTCGGCTGCCGTCCTCCATGGAAGACAGCTTCCGACACTTGTGGGGGGATGCTGTTGAATGGCCAAATAGTTACTGAGTATACAGCTGTTCTCTGGGTGTGTATAGCAGCAGAGTGTATATAACAGGGCTCATTCTCTTTCTCTTTCCCTCCCCCTCCCTCCCTCCTCTCTATGTTCAAGCATCATCTTTTCTCCAATGTCATTATATCCCCACAGAGCCCTTGCACACAAACAAACTATAAATACAACCGCAAAGCCTTTGTTTCATTTCATGCTTCCGAGCTGCTCCCCAGAAATTAGTTTTCACTCGGGCAGAGAAGAAGCTGTGAAGTTGTTCTCTGATCCCTCAAAATCCTCCCGAATTGTTGCCTTTATTGCCCAGAACTAATGGGGCTGGAAGAGAACCAGCGCTTTCGGCGGATGACTCAGAAGTTCAAGCTGACCTGGAATATATTGCTTTTTCCTCTCAATTTCAG
Seq C2 exon
TTTGAATCAGAAACTGCAACTGGAACAGGAGAGGCTCAGCTCTGATTATAACAAGCTGAAAATAGAGGACCAGGAGAGAGAAGTGAAACTGGAGAAGCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026764:ENSMUST00000028102:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.568 A=NA C2=0.100
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types