BtaINT0087024 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005903 | LRP5
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N1K8]
Coordinates
chr29:46531657-46533882:+
Coord C1 exon
chr29:46531657-46531873
Coord A exon
chr29:46531874-46533592
Coord C2 exon
chr29:46533593-46533882
Length
1719 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
ACCTGTGTCTTTCCGTCCAGGAA
3' ss Score
10.86
Exon sequences
Seq C1 exon
GTGATCGATGTCGACGGGACCAAGCGGCGGACCCTCCTGGAGGACAAGCTCCCGCACATTTTCGGATTCACGCTGCTGGGGGACTTCATCTACTGGACCGACTGGCAGCGGCGTAGCATTGAGCGTGTGCACAAGGTCAAGGCCAGCAGGGACGTCATCATCGACCAGCTGCCCGACCTAATGGGGCTCAAGGCCGCGAATGTGGCCAAGGTCGTCG
Seq A exon
GTGAGTCCGGTCAGCCTCCAGCCGGGGGCCAGCCCTGCCACAGGCTCCCCTTTGGTCCACAGGCAGCCAAGCTGGAGGCTGAAGCTGGGGGTGTGTGTGCCGGGCTGGGGCACCGGCTCTGGGGCTGGACAGGGCAGGAGGTGGTGAGAATACAGGACATGTGATGGGGTGGGGTGTGGACCGGGCACAGTGAGTGGGCACGGCTGGCAGTTGTTGCTCTTACGGTGGCTAACACTCGCCTACTGCATGCCAGGCTCTGGCTGAGCGCCTTAGTACAGCCCTCTACACTAATGACAAGGCGGCCCCGTTAGTGCCGGGGCATACAAATGGGTGGCCAAGCTCAAGACTCACGCCTGAGGCTGCCCTGACCTCATTGCTGGGCGGGGCTGAGATCGTTATCCAGTGTGACAGGCTGGACCCTAAAATGCACACCGTATATCTAAAAGCTGGGATCTGCAGAAAGTTCCCTTGACACAGTGACTTGTTGCTTGATGACTAGGATTCCCAGTGCAAGTCCACAGTCTATATTGGGAACAGCAGTGTCCAGCTGTGCCGGGGGGACAGAAGCGGGGATGGGACAGTGGGCTCTGTAGGGACAGGGAGTCGTCCCCACCTGGGGTCCCGGTGCCTAGTCCTACACCTTCTCATCAGAGACACTCAGTTGACCTTCGCTGGAGGGAGGGACGGGGGACTGACCAGAGAGGCCCCAGGGCTTGCCCTCAAGTTGCTTCTAGTCCAGTGGGTGAGCTCTGCTGCCAGGCTGGTGAGTAGAGCTGAGATGTGAAAGGGATGCCTGGCTTTAAAATGCAAGGGAGGGCATTTGAGCGTGGAATTTGGGGAGCAGGTGGGGGGCAGGGTCTGCCCGGCAGAAGGGACAGCTGAGCACGGGCCTGGAGGTGCGGCCTGAGGGGCACCTGGGGGGTGGGGCGGGGACGGTGTACCCCTGTCTCCAGGAGAGGTCTTTGGTCTCAGCCTGCCCTCCTCAGACCAGATGATGGAATCAACACACTTGGTTTACCAGCTGCCTTGGAAAGCACTTTCTTTATCTACGGCAGAGTGCAAAGCCCACCAGCGAATGGGTGTTTGAAAAGCAAAGAATAAAGCCGCAGAGATAAGAAACATGATGCCTCTATGGGGTGTGATTTAAAGTTGAGAAATTGGGTCCCTTCCCACCTTCTCTCTCTCTCTCGTCAGGATTTACTGAGAAAGATGGCAGAGAGGATTTCTTTTTTTAGCTGAAATATTTAACACGAAATTAAAGCCAATTTTAACAGCATTGCGGCAGAGTGAGTCTAACAGGCTGGCCCAAAATAAAATATATGCTGACTACTGTCTGCTGGAATAAGAAACAGGCGCCTTGGGCCGTCCTGGGTGAATCTGAGATGTCGAGGGCGCTGAGAATGTCGGGGACTCGGAGGAGGAACCATCCGGGTGGTGACTTGGGCTGCAGTCTGGTTGCTCAGCAGGCAGGGAGGCCAGGCCCAGCAGGCAAGGGGGAGCAGAGGGCGAGGCGTCCCCAGGCGGCTTTGAGGAAGGGGGCGTTCAAGTGTGCAGGGAGGCCCGGGGCCTGGAGCCAGGGGGGACCCGGGTTTCCACCAACCCTACCTGCTGTCCCCTAGTGGCGCCTGGGGGAGATGAAGCCACATACGACCAGGAGCCACCGCCCCCCCCCCCCCATTGCAGGGCCACTGGGCCTAGAACCTGTGTCTTTCCGTCCAG
Seq C2 exon
GAACCAACCCGTGTGCGGACAGGAATGGGGGCTGCAGCCACCTGTGCTTCTTCACGCCCCGTGCCACCAAGTGCGGCTGCCCCATCGGCCTGGAGCTGCTGAGCGACATGAAGACCTGCATCGTGCCCGAGGCCTTCCTGGTGTTCACCAGCCGGGCCGCCATCCACCGGATCTCCCTGGACACCAACAACAACGATGTGGCCATCCCGCTCACGGGCGTCAAGGAGGCGTCCGCCCTGGACTTCGATGTGTCCAACAATCACATCTACTGGACCGACGTCAGCCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005903:ENSBTAT00000007756:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(61.5=32.9)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=37.1),PF0005812=Ldl_recept_b=PU(24.4=10.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCACATTTTCGGATTCACG
R:
TGTTGTTGGTGTCCAGGGAGA
Band lengths:
358-2077
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]