RnoINT0086703 @ rn6
Intron Retention
Gene
ENSRNOG00000015911 | Lrp5
Description
LDL receptor related protein 5 [Source:RGD Symbol;Acc:1309329]
Coordinates
chr1:218855508-218858105:-
Coord C1 exon
chr1:218857889-218858105
Coord A exon
chr1:218855798-218857888
Coord C2 exon
chr1:218855508-218855797
Length
2091 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
GCTGTGTATTTGCCTCACAGGAA
3' ss Score
8.8
Exon sequences
Seq C1 exon
GTGATCAACATAGACGGGACAAAGCGGCAGACCCTGCTAGAGGACAAGCTCCCGCACATTTTTGGGTTCACTCTGCTTGGGGACTTCATCTACTGGACAGATTGGCAGCGACGCAGTATTGAGAGGGTACACAAGGTCAAGGCCAGCCGGGATGTCATCATCGATCAACTCCCCGACCTGATGGGACTCAAAGCAGTGAACGTGGCCAAGGTTGTCG
Seq A exon
GTGAGTCCTGAAGCTCCGAGCCGTAGCTCTGCTTGGCCAATTGGTACCAGGAAAGTGACAGGTTCAGATCTGGGCTTGGTGTCTAGAAGGGTATCCCACTCTGAGAATGGACAAGACATGAAATGGTGACTATGTCTGGCTAAAGATAGGTGGGAATGGGGGTGGCATGTTGCCCAGGGATAAAGGTTAGATAGTGGTCAAGTGTGTTGGGAGTGACTGTGGCTGACTGTGACTTCTTGCTGTATGTCAGGATTTGGTCAGAGCTTCAGTGCCTAAGGCCAGCTGTGTGTTAAGCCTAGTTCCACCCCATGAACACCGGGGATGGAGGGAGAAGGCCATGTGAGGAACATGTGGGACTTGTTGCATCTGCCTTGCCTTTGTGGCTGAGCCTGGCTGTGACTCTCAAACACAGACTTTTTATCTGAAAGGCAGGATGGAAAGAGTGTACTTTCTGAGGGCTCCGGAACGCAGGTCTGTAAGTTACACTCAGACCATAAGTTCTACGTGGACGGCTCCACAAAGCATGGGCACTGTTCCCATCTGCCGCTCCCATGCCTGGGCCAGGCCTACATGTCTCAGGCTGTGCCTAGTAAATAAATGCAAGAAGAGCCTGCAGGGTTTGGGCCGCTTGTGCAGAGTCAGATGTAGGTGCGATGTTAGAGAGCTGCCTCAGGCTGGAGAGGTGGCTCAGGAGCTCAGAGTGAGGACCCAGGCTCTGCTCCCAACCCAACCACCTGTAACTTCAGCTCCAGGGGCCTCAATGTCCTCTTCTGACCTCCAGCATTTACACACATGTGATATAACACACACACACACACACACACACACACACACACACACACACACAATGAAACAAGAAAACAAACTAAAAAATCAACCAAATCTTTGAGCTGCTGAGATGGTTCAGTGAGTGGAGGTGCTGACAGCCAAGTCTGATATGCCGAGTTCAGTGTGCAGTTCCCACACGGTGGAAGAAGACACCAATTCCTAAAAGTTGTCCTCTTACCTTCACATATGTGCCATAACATGTGCATTTATGTGTGTATGCATGTCACACATACACACATATGTAGGCACACAAGCATGCAGGCACATGCACACCCATAAAGATTACATTCATATGCACACACACACATGTACACACACCCATATATACCAATACACACACACATACACATGAGTACAAATACATGTACTCATACATATTGTATACATGCACACACAGTAAATGTGACTGAGGTGCCCAGCTTGACCAGTAGGAGGCAGGGAGTTGAGCTTGGATCTGCAGGATCAGGCAGAGTGCGCCTGGCAGAAGAGAGACAGCTGAACAAAGGCCCAGCAGGGGGGCAGCATGGGTGACCATAGGTGTGGCTTAGTGTCTCCTGTCACTGTGGTAGGCCACATGGCCACCTGCAGGGCTGGCAGTCTCATTTCACCAGCCACCTGTGAAGGTACCCCTGTCATACACAGGACACAGAAGGCCAGGCCCACCTTCGTCCTTTAGGCAGCAGATGAGCAAAGCAATCCTGCCTGAGGCGCCAAGTAAGTTGCTGCTAGCTGCAATTCGGAAGCAGAGTGAGGTAACAGGCGGGCCCAAAGAAATGAATGATACCTTCTGAGTGCTCTAAGCAGACAGAGATGCCATTGGCTGGCCATGGCAAACCTGAGTTTTATAGGTTGCTAAGGGAGTCAGTGAATTAGGGAACAGCAAGAGTCCATGTCATAGGTTAGGCGTTGAGGAGGAGCAGCTGGCTAGTCGTTGAGTTATGGCACCATTGCTTGATGGACTAGATGTAGCTCAGGCTGGGCCATCCCTTGTGCAGATGATGGTCCCTCGAAGCCTTCTGTCTCCTATTAACAGATGTGATACTCTGGGACCAGGGCCTGGCAGTGGTAGGACCTGTTGTATTGTCACTGCTAATTGACCGTAGTAGAGAAGGCTTTGGCTGCCCTGATGCGGGCTTTCTTTCAGGCCTCCTTCCCAGGTTCCCTTTCGGTGGATGGCAGGAATACAGCCACACAGAACTGTGAGCTGGTGCTCCTCCCCACTGACAGACTGCTGTCATTCAGAGCTGTGTATTTGCCTCACAG
Seq C2 exon
GAACCAACCCGTGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACACGCCACCAAGTGCGGTTGCCCCATAGGCCTGGAGCTGCTGAGTGACATGAAGACCTGTATAATCCCTGAAGCCTTCCTGGTGTTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAATGACGTGGCCATCCCGCTCACCGGTGTCAAGGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAACCACATCTACTGGACTGATGTCAGCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015911:ENSRNOT00000022213:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(61.5=32.9)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=37.1),PF0005812=Ldl_recept_b=PU(24.4=10.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]