MmuINT0092723 @ mm10
Intron Retention
Gene
ENSMUSG00000024913 | Lrp5
Description
low density lipoprotein receptor-related protein 5 [Source:MGI Symbol;Acc:MGI:1278315]
Coordinates
chr19:3620015-3622726:-
Coord C1 exon
chr19:3622510-3622726
Coord A exon
chr19:3620305-3622509
Coord C2 exon
chr19:3620015-3620304
Length
2205 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
GCTGTGCATTTGCCTCACAGGAA
3' ss Score
8.62
Exon sequences
Seq C1 exon
GTGATCAACATAGATGGGACAAAGCGGAAGACCCTGCTTGAGGACAAGCTCCCACATATTTTTGGGTTCACACTGCTGGGGGACTTCATCTACTGGACCGACTGGCAGAGACGCAGTATTGAAAGGGTCCACAAGGTCAAGGCCAGCCGGGATGTCATCATTGATCAACTCCCCGACCTGATGGGACTCAAAGCTGTGAATGTGGCCAAGGTTGTCG
Seq A exon
GTGAGTCTTGGAGCTCTGAGCCATGGCTCCACTTGGCCAGTTGGCCCCAGGAAAGGTGACAGGATCAGACGTGGGCTTGGTGTCCAGAAGGGTGTTTCACTCTAAGGATGGACAAGACAGGAAATGGTGACTGGATAGGTGAGAGTAGGGGTGGCCAGGAAGAGAGAAGGGAGTGGTCACGGATTAGCTGTGTTGGGAATAACTGTGGCTGATGTGTCACTTCTTGCTGAATGCCAGGCCTTGGTAAGAGCTTCAGTGCCTGAGGCCAGCTGTATGCTAATGCTAGTGTCCTCATGAACACTGGGGATGGAGGGACAAGGCCATTTGAGGAACAAGTGGAAACCTGGGACTCAGTGCATCTGCCTTGCTTTTGTCATCGAGCCTGGCTGTGATTCTCAAATACACACCTTTTACCTGACAGGCAGGATGGTAAAAGAGTGTACTTTCTGAGGACTCCAAACGTGGGTCTGTATGGTGGGGACCAAGGACCGTTTGACGAAGGATGGGCTCTGTTCCAGTCTGCCACTCCCATGCTTGGTGCCACACCTGGGCCATGCTTACACGTCTCAGGTAGCCTTTGTCTAGTAAATAAATGCAGGAATAGCCCTCAGTGGTTTGGGCCACTCTTATAGTCAGCAGGTAGGTGTGGTGTTTAGAGAGCTGCCTCAGCCTGGAGAGTGGCTCAGGAGCTCACAGTGCCTCCTGGTCTCCTGGAAGACCCAGGCTCTGTTCCCAACCCAACCAACTGTAACTTCAGCTCCAGAGGCATCCGATGTTCTCTTCTGACTTTCTTCAGCATTTGCACACATGTGACACACACACACATAATAATAAAACAAGAAAACAAAAGAAGACAAAAAAGGAACCAAATCTATGGGCTGGTGAGATGGCTCAGTGAGTGGAGGTGCTTGCCGCCAAGCCTGATACCCTGAGTTCAATGCTCAGGTCCCACATGGTGGCAGAAGGCACCAATACCTAAAAGTTGTCCTTTTACCTTCACATGTGTGCTATGGCATGTGCATTTATGTGTGTAAGCATGTCACACGTACACACATGTAGGCACACAAGCAGGCACACATGCAGGCACATGTACATCCACATATATCACGCATACACCCATACATATTGCATTCACATGGGGACACACAAGTACACATGTGTATACACTCATACCGCACACTCACATACACATGTGCATACACACAGGCACAAGCACATACGCTCATACATACCACACACAACCACACACAGTAAATGCGACCGAGCTGCCCGGCTTTAGCAGTAGGAGGCAGGTGGTTGAGCTTGTATCTGCAGGATCAGGCAGGGGGTGCCTGGCAGAAGAAGAGAGACAGCTGAACAAAGACCCATCAGGGAGGCAGCATGGGTGACCAGCTTGTATGTCCTGTCACTGTGGTAGGCCACATGGCAACCTGCAGGGCTGACAGGCTTCATTTCACCAGCCACCTGTGAAAATGCAGCTGGCACGTGCGGGCACCGAAGGCCAGGTCCACCTGCGTCTATTGGGAAGCAATCCTGCCCGGGCTGCCAAGTCAACTTGAGAAGCTGCCCCTTCACCCCGTTTGTTATCGATAAGGAGAAGAACACTCCTTTTGTAGTTTAAATTCTTAACATAAGTTGCTAAGGCTGTAGTTTGGAAGCAGAGTAAGATAACAGGCTGGCTCAGAAAAAAATGACTGATACCTTCTGAGTGCTCTAATCAAAGACAGATGTCATTGGCTGGCCATGGCACACCTGCATTTTATAGGTTGCTAAGGGAGTCAGTGAATTAGGGAACATTCTGGAAGAACAAGAAGAACCAATGTCATCAGGTTAGGCATTGAGGAGGAGCAGTTGGCGAGAGGTTGAGTTGTGGCACCATCGCTTGATGGGCTGATGTAGCTCAGGCTGGGCCATCCCTCGTTTGCAGACGATGGTACCTTGAAGCCTTCTGTACTCAGTTTCCACTATTAACAGATGTGGTGCCCTGAGACTGGGGCCTGGCAGTGGTAGGGCTCTGTTGCATTGTCGCTGATAACTGACTATAGTAGATGAGGCTTTGGCTGCTCCCAACCAGACTTTCTTTCACTCCTCCTTCCGGGGTCCCCTTTTGGTAGGTGGCAGGAATCCAGTCACACACAACTGTGAGCTGGTGCTCCTCCCCTTTGACAGACTGCTGTCGTTCAGAGCTGTGCATTTGCCTCACAG
Seq C2 exon
GAACCAACCCATGTGCGGATGGAAATGGAGGGTGCAGCCATCTGTGCTTCTTCACCCCACGTGCCACCAAGTGTGGCTGCCCCATTGGCCTGGAGCTGTTGAGTGACATGAAGACCTGCATAATCCCCGAGGCCTTCCTGGTATTCACCAGCAGAGCCACCATCCACAGGATCTCCCTGGAGACTAACAACAACGATGTGGCTATCCCACTCACGGGTGTCAAAGAGGCCTCTGCACTGGACTTTGATGTGTCCAACAATCACATCTACTGGACTGATGTCAGCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024913:ENSMUST00000025856:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(61.5=32.9)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=37.1),PF0005812=Ldl_recept_b=PU(24.4=10.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types