BtaINT0087028 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011761 | LRP6
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MDE1]
Coordinates
chr5:98130887-98137634:+
Coord C1 exon
chr5:98130887-98131213
Coord A exon
chr5:98131214-98137431
Coord C2 exon
chr5:98137432-98137634
Length
6218 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TGCTTTTTTCTCTCTTTAAGCTC
3' ss Score
10.86
Exon sequences
Seq C1 exon
GACTCAACCGTGAAGTTATAGCAGATGACTTGCCTCATCCTTTTGGCTTAACTCAGTACCAAGATTACATCTACTGGACGGACTGGAGCCGACGCAGCATTGAGCGTGCCAACAAAACCAGTGGCCAAAACCGCACCATCATTCAAGGCCACTTGGATTATGTGATGGACATCCTCGTGTTTCACTCCTCACGGCAGGCAGGATGGAACGAGTGTGCTTCCAGCAACGGGCACTGCTCCCACCTCTGCTTGGCCGTGCCAGTTGGAGGTTTCGTTTGTGGATGCCCTGCCCACTACTCTCTGAATGCTGACAACAGGACTTGCAGTG
Seq A exon
GTAAGTTGCATTGCCCCCTCAACGCAAACTAAAGTTAGAGAAGGAAGCAGACTTTTGAAAACACTGTAGTTCATATTCTTTCTAAAAGGAGAGTTGTCAAAGTCCAGAGTTGATCATTTGTTTGTATAAAAGGGAAGGACTAAAAGTGAAAAAGTGCAAGTTTTTGTTACTTTTGTTCAGTGATAACTGGTTGATGTTATGGAAAAATTGATATTATAGGAAAAGTAAGTATTTTATCCTTGGGGATTAAATATGAATAGCAAAATTTGCATAGCTTCTTTGAGAGAACATGCATGTACGCTAGACATAATTCATATTTATTCACGGTGAAGGAAGGAAAGAACAGTACAAATAGTACAGCAAAGAGACTCTACAAAATATAATCTCCTTGTCCTTTGAAATTCGCAGAATAGGTGAAAGATGAAAAATGTAAGTGTGCAAGAGGCCAGGCTTATGAGTAAATGTAGCCAGTATGAAACAATAGTAAGTAGATGGGGAGGCAAGCTAGAGAGCACAGGCTCTGAACGCAGTGAGTGGTTGCCACCTTATTCTAGCTTACGGTAGCAGGTCGTCTCATCTAGCCATGAATCTGGGTTCACACGCACAAAGAGACACACACACACACTCTGCTTGGAACACCAGGACACAGTGTATAACAAAACATTGTTGGCTTGGGGAATCCTGATTTATGACTCACATGTATGTGAACGTTCTTTTGGATACATAAGAACAAATTAGAAATTGATAGATATGATAAAGAAATAGAATTAGATCAGGAAAAGTAGATTTGTAGGAGAAAGGTAGGGTGTGATTCACTATGTTAGAAGGTAACAATTGCTGTAGGATATTGGATATAATGAATGACTGAAATTACTTTATTCTGTGCCTGAAAGTATAGGAGGTCACATAGGCAAGGATTTAGTGTGTTCTCACACAAGGCTTAGTTCTGAAAAAGGAAGAACATCAGTTTATAGTTGAATGATTTGGAGTCTCTGTCACACATTAGTTTGTGTTTTGCTAAAGCAAGTCAGATTTTTTTTTTTAATGGTTTTTTTTAAATTTAATTTTATTTTTAAACTTTACATAATTGTATTAGTTTGTATCAGATTTTTTTAAATTTAAATTTATTTATTTTAATTGGAGGCTAATTACTTTACAATATTGTATTGGTTTTGCCATACATCAACATGAATTTTAGTCAGGTTTATATTGATTTTCCTATGGGAGATAGAAACATTAAATAGGTAATTAGAGTAATCTCTAGCTCAGAGAAAAAGAAATGAAGTTAGGGGCATAAATTTTAGAAATGCCAGCATGTATTTAAAATGGGCACTTAGGGAGAAGGTGTATATCTGGCGGTCAGCAAACTTTTTCTTGAATGAGCCAGAGAGAATATGTAGGCTTCATGAAGCCTGTAGTCTCTCACACACCTCTTCAGCCCTGTCCACTGCGATGTGAAAGCAGCCACAGATGATGTGTTTTTAAAATTGGATCATTTCTGATAAACTTTTATAAAAACAGGCAGCAGGCCAGATTTACCTTGTGGGCTGTAGTTTGCCAGTTCCTGGTCTGGAGAAAAGAAGGGGTCTGGTAACCTCAGGAGCTGTGCTTGTGGAAGGGAAGTTCTCAGTAGACATTGTAGAGCAGCAGCCAGAGAGGCCAAAGGATACGACCCAGAAGGCAGGAGAAAAGATTGTTTCAGAGTAGGACTGTGTTGTGATTGCTGCTGAGAGGTTGAGTAAGGTGAGGCCTAAAATATCCACTGGATATTCAGGTGAGATGGTTGTTAATAATCCTGAAAGAACATAATTTCAGGAAAGTAACAGTGAAAGATGGAAATAGATCAACAAGTGAATGGAGCACAGAAAGGGGATAATAGTGTGTGTGTGTCATGTAGACTTTTTTTTAAAGGAGTTTGACTTTGGAAGGAGAAAATAGGGGTAGGAAGTGATGGAGGATGGAGATAGAAGAATATGGAAGGGCCTTTCGAGGTCATTGTTTGGGATGTTTATACCAGTGTGTTCTAGTTGGTAAATGAAGGTTATGAGAAATCACTGCTGAGTATCCCTAGTGTCTGTCTTGGGCTGTTTCTGAGATGATTAGCAGTGTTTCCAGAGGCTTCCTGTCCATGTATTTTTTTTGTAACGTGTATTATTTAATATTTGTGCAGAGATGTATTAAATCCCAAAGGAGATTACAAGAGAAGTTTAACACAAAGTACTTGCCCTCAGAAAGTTTTCTAATGTTGTGTTGTTTACTCCTGGACCTGTGTTTCAAAAGCTAAATCAGATCTTGGCCTTTCTCTGCTCAAAATCTCCTATTTCACGGGGAGTGAAAACCTCGTTCTAATGACCTACAAGTTCCTGCACGATCTGTTCCTTCACAGCCTCCCCACTCCCTTGCTTCTCTGACTTCAGCTTTTACTGTTTTCTCTTTCTCTCCATGGCAGCTACACTAGCCTCAGTGCTCTTTTCACATGTGCCAGTTACTCCTACTTCAGGACTGTGGTACTGTGTAGTTCCTCTACTTGGAATGTTTTCCTGCAAATATTTGCATGCATATACTTCACTTCCATGTCTTGACTTAATCATGACCTCCCCAGAGAGACCTAATCTGCCCTATTTAAAGTTGCAAGTTCTCCTTCCACCCTATCTTGCGTTGCCAGTGCCCCTTACCTACAATTCTTCTTTTGCCCATGACTCTTAATCACTCTCCGGTATACTGTGTAACTCATTACTTATATACTATAGCATCTTTATTATGTTTATTACTTACTGTCTGTTTATTGAAATGTAAACTCCAGGAAGCAATTTTTTTTCCTGTTTTTTAACTGATGTATATCTAAGGTGCCTAAAATAGTTTTCGGCAAACAGTAGTCATTCAAGAAGTCATTGTTCAGTAGAAGAATGAAGAAGCAAGACAGGATTTGGAAAAACAGGTGCTTTTCCATTCAGCAGCTTTGTGACCTGGGAACAATTTCTTAACCTTTCTTTAAAAATTAGTTAACTATTGTTTGCTCACCTGTAAAGTGGAATAATTTGGGGGACTAGAAGACATCTGGTATGATGTGTGGCATGCTGGAGGTTCTAAGTAAATGCTTGTTTCTTTTTTTCCCCCCCGGTTCTTGGAAATAATTTTGTTTCCTTTCAAAATCATGGCTACAGGGCTCTCCTTAATGATGTCATCTCATGCTTTGTCTTCATTTGTTTACTCATGTATTCTTTCAGTGAATATTTACCGAACAGCTAATCCACACTGGGCATTATATGAGCCAATGAAGAATGTATTGCTGAATGAAACAGACATTAATCCCTGCCGTTGTGGAGGTTGTGTTCCATCGGCATAGATAATGAACTAAATAAGTAAACTATATCATGAGGTAGATGGAGATGAGTGTTATGGAGAAAATTATGAGCAGGAAAGGGTGAATAGGAGGATCTTGATGTTAAATAGGATCATGAGAGAAGTCCTGGCATAAAAGTGACACTGTGTCAGGAACTGAGGGAGGTGAGGAAATGAGCTGTGCTGGCTCTCTGGGAGAAGACCTGTCAAGCAGAGGGGAACAGCAAATACAGAGGCCCTGCGGGGAACATGTCTGGCATGTTGGAGAAACACCTGGGGGCCAGTGTCTCTGGAACAGAGTGTAAAGAGATTAAGTCAGAGAGGAAGCAGGAGGCCACATTGTATAATGCTGTGTTCAGTACTGAAGCAGTTGGCCTCTGTGGCAGCTTTGTGCAGATTGAGAAAAGGTGTTTCCTCTGGGCACATGCAGCTGCACAGGTGCTTGACTTGGCTACCCAAGTGTGGCCTGGACTTCAGTCCCTACTCGAGGCCTTTGGCACAGCTCAGAGATGGCACAGTCCAACATGGTGGGCTTGGGCTTTTCACTTACAATGTTCTTATACCAGAGTGGTACCTTTCTTTAAGCTTTGGGTGAACACTTGTGTCTTCGGAGGAGAGCAGAAAAGCTCCTGCCTGCATACACCTTCTCCTCCAGCTTCTGCATGTGGGAGTGCAACGCTGAGACAGCCCAACAGGACCGTTTTGAAAGCCTTCTGCAAGAGACGAGGGAGTGGTGGTTAGAGGTGATATAAATTAGCATGGGTTTAGGCTTACAAAACTGAATATCCTTTGTCCCTTTTGTAAATAAGTCAAAACGTCAGCTTTCTCCTGGAACTATTTAGTCAACTGTAATTGATGTCACCCATAGACTTTTTGAAATGAGTATTTATCTGGAGCCATATTTGGCTTTGTCATCATCCATGTTTCACCTAATCGTGAAAGCTTATTAAAGATTAAAATTTGACTCAAAGAAAGAAAAAAACAGTACAAAGTGAAACATAACTAGGAGCCTAATATATATTTGATTAATTATTTCCCAGGCAGGAAAATTTGGCAGCTAAAACTATGGGGTCTTCTGAGTTTCATTGTATGTCTTAATATGCTATTTTGTTGGAAGCTTACTATTCAGGACCTCTTTTTTTTTTTTTTTTCTATTTTCTTGATTTATAAGGAAGTAGTACTGCCAAAAAGTAATTCTTTTTTTTTTTAATGGGAGACTTGTTACCTACTCTGTTGTGACATGTATTTTTACTACTTAAGGTGTTGGTTCTACTAAAATTGCTGAAAGTTGTTAAATCAGTGTGCTGTGGACTCTACACAATGAAGAGTTCAGTGGGGTCACTGAAATATTTTCTAAATCTTCTGAGCTAGGTGTGGACTTTCAGCCAGTGGGGAACTTAAAGCATAATTTCAGGGTTGTGAATACCAAGTTTCTTTGTGAGAAGCAATGATTTCTTCAAGATTTAAGCTGATATGCATTTGGGTGTAGGTGTAACATCAACCAGGGAACCACAAGTAAGGGCACTGTGAAGACTGGGGTTTAGAGGGAGATAAAGCAAGGAGTTCTGTTTTGGCCATTTATGTTTATATCCCTGATAAGGACAAAATTCTGCTGGATTTAGGTGATGACTGAGCAACAAGAGAAGAGAGTATAATTTGGGGATTTTTACATTTCTTTTAATAAAGATTTTTAAAAAGACTGTTAGACTTTGAAGTTTTGGTAGCTTTGTCAGATGGTGTTCTTTTCTGGATACTCTCCTCCATTAAAGATGACTGCATAGTAATCAGAGGCCTAGTCCCTGGGACAGAGAAGTGTTGTCTCGGCTGCATTCCCTGTTTTGTAGACTTCAGGCATCAACTAGTGTGTGACTTTTTTTTTTTTTTAATGGTTCTCTCTCCTTGCAACCATTACATCCCCACAATGTAAAACAAAGCCTATATTTCTACAACCCACGAGGGTTTGTTTCATTCCTACTAACATCACATTTATTGTTGCGACTACTGATAATAAGAAGCAATAGCTATTTTTACTTGTCATTTATATAATGCCTTATAGTTTTTTTGTTCAGGTATTGTACAATTGGGGCTTCCCTGGTGGCTCAGTAGTAAAGAATCCTACTGCCAATGCTGGAGATGTGGGTCTAATCCCTGGATGAGGAAGATCCTCTGGAGAAGGAAATTGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGAGAGGAGCCTGGCGGGCTGTAGTCCTTGAGGTTGTAAAAGAGGCATGACTTCGTGACTAAACAACAACATTGTACAATTGACATAATACCTTACCTTTTAATTTTTACTTATGTTATAAAAGTCTTATAGCAACTCAGTGAGCAGGACAGCATAACTATAAACTTCTAGTTGAGTCAATTTCAATCCAAAGAGGTTGAAGGCTGTAGTTAAGATCAAGTGACTAAATTATGTGAGAACTGAGACTAAAACCACTCTTGAAGTCTCTTTTCTGACCTATGGAGACCCAGACTTCCTTTCACCCACAAGAATAGATGAGGGAGGAGTTAGGATTATTTACTTGGTAGGCAGGGGAATTTTGTTTGTCAAATGCTTCATTGAAATCAGGTGTCCTGTGCTGATGCCACTGTGGACATCAGACAGAGAAAAACTGGCTAGTTGGCTGTGTCATGGCATAAATTCATAACTGGTTTAGTAACCAGAGTGTGATCAGTGTTTCCTCTAAGAGTTCTGAAGGCATTCCAAAGGGCTTTGTCTCATACAAGTCTTCAACATACATGTCTGTTTTTTATGAGATACAGACAACAGGCCAATCAAATCTTTGAGTGATCCGAGACTTAGGATAACTGTTTCATATTTGCTTTTTTCTCTCTTTAAG
Seq C2 exon
CTCCAACTACTTTCCTGCTCTTCAGTCAGAAGAGTGCCATCAACCGCATGGTGATTGATGAACAGCAGAGCCCTGACATCATCCTTCCCATCCACAGCCTTCGGAATGTCCGGGCCATTGACTATGACCCCCTGGACAAGCAACTCTATTGGATTGATTCACGACAAAACATGATCCGAAAAGCACAAGAAGATGGCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011761:ENSBTAT00000061164:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(45.9=15.5),PF0005812=Ldl_recept_b=WD(100=37.3),PF146701=FXa_inhibition=WD(100=33.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]