BtaINT0087114 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004969 | LRRC14
Description
Bos taurus leucine rich repeat containing 14 (LRRC14), mRNA. [Source:RefSeq mRNA;Acc:NM_001102379]
Coordinates
chr14:1610263-1611617:-
Coord C1 exon
chr14:1611033-1611617
Coord A exon
chr14:1610933-1611032
Coord C2 exon
chr14:1610263-1610932
Length
100 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TGTGTTTCCCCCCACCCCAGCAC
3' ss Score
7.09
Exon sequences
Seq C1 exon
GAAGCATACGCTGCGGGTGCTGGATATGACGGGCCTCCTGGATGACGGCGTGGAGCAGGACCCTGGCACCATGAGCATGTGGGATTGCACGGCAGCTGTGGCCCGCACGTGCATCGAACAGCAGCAGGGCAGGACTGCAGAGCCTGGCCAGGCCCCTGTTCCTGTGGAGGTGCGTGTGGACCTGCGGGTGAACCGGGCTTCCTATGCGTTCTTGCGGGAGGCACTCCGCAGCAGTGTAGGCAGCCCACTGCGGCTCTGCTGTCGGGACCTGCGGGCTGAGGACCTGCCCATGCGCAATACAGTGGCCCTGCTGCAGCTTCTGGATGCAGGCTGCCTGCGCCGCGTGGACTTGCGCTTCAACAACTTGGGCCTGCGCGGCCTGTCCGTCATCATCCCACACGTGGCCCGCTTCCAGCACCTGGCTAGCCTGCGGCTGCACTATGTGCATGGGGACTCTCGACAGCCCTCTGTGGACGGTGAGGATAACTTCCGCTACTTTCTGGCCCAGATGGGCCGCTTCACCTGTCTGCGGGAGCTCAGCATGGGCTCCTCTCTCCTCTCAGGGCGGCTGGACCAGCTGCTCAG
Seq A exon
GTGAGTGGACTCTGCTATGGCCCCGCCTCTCCCTTCCCCTCCAGCAGGCCCTCCCCTGGCTCTGACTATTTGTGACCCCTTGTGTTTCCCCCCACCCCAG
Seq C2 exon
CACCCTGCAGAGCCCCCTGGAGAGCCTGGAGCTAGCCTTCTGTGCCCTGCTGCCTGAGGACCTGCGTTTTCTGGCACGGAGCTCCCATGCTGTCCACCTCAAGAAGTTGGACCTGAGTGGCAACGACCTGTCTGGGAGCCAGCTGGAGCCCTTCCAGGGTCTGTTGCAGGCAGCAGCAGCCACACTGTTGCACCTCGAGCTGACGGAGTGCCAGCTTGCCGATACCCAGCTGCTAGCCACACTGCCTGTGCTGACTCGTTGTGCCAGCCTCCGCTACCTCGGCCTCTACGGCAACCCACTGTCTGTGGCAGGGCTCAGGGAGCTACTGCGGGACTCGGTGGTGCAGGCTGAGCTGCGCACAGTGGTGCACCCTTTCCCTGTGGACTGCTACGAGGGCCTGCCTTGGCCACCGCCTGCCTCTGTCCTCCTGGAAGCCTCCATCAATGAGGAGAAGTTTGCCCGTGTAGAGGCCGAGTTGCACCAGTTGCTACTGGCCTCAGGCCGTGCGCACGTGCTCTGGACCACAGACATCTACGGGCGCCTGGCTGCAGACTACTTCAGCCTGTGACCTCCAAGCTCTGGGTGAGAGACTGTCCGGGGGTCCAGGGCTGCTGGAGACCCCTTGCCCCTTGGGTAGGCAGAGCCTATCCTGGAACCCTGTGGAGGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004969:ENSBTAT00000006542:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.046 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138551=LRR_8=WD(100=36.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTGTGGACGGTGAGGATA
R:
GTTGCCACTCAGGTCCAACTT
Band lengths:
245-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development