RnoINT0086805 @ rn6
Intron Retention
Gene
ENSRNOG00000016128 | Lrrc14
Description
leucine rich repeat containing 14 [Source:RGD Symbol;Acc:1560202]
Coordinates
chr7:117777870-117779505:+
Coord C1 exon
chr7:117777870-117778454
Coord A exon
chr7:117778455-117778553
Coord C2 exon
chr7:117778554-117779505
Length
99 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TACCCCCTTTGTCCCCGCAGCAC
3' ss Score
11.01
Exon sequences
Seq C1 exon
GAAGCATACACTGCGGGTACTGGACATGACTGGCCTCCTGGATGATGGTGTGGAGCAGGATCCAGGAACCATGAGCATGTGGGACTGTACAGCGGCGGTAGCCAGAACTTGTATTGCCCAGCAGCAGGTCGGGACTGCTAAGCCAGGGCTGTCACCAGTCCCCGTGGAAATTCGTGTAGACCTTCGGGTAAACCGGGCCTCCTATACATTCCTTCGTGAGGCACTCCAGAGTAGTGTGGACAGCCTGCTGCGGCTCTGCTGCCGGGACCTCCGGGCTGAGGATCTGCCCATGCGTAACACTGTGGCCCTACTACAGCTTCTAGATGCAGGCTGTCTGCGCCGTATAGACCTGCGCTTCAATAACCTGGGCTTGCGTGGCCTGTCTGTCATTATCCCACATGTGGCCCGCTTTCAGCACCTAGCCAGCCTGAGGCTGCATTATGTGCATGGGGACTCCAGACAGCCCTCCGTGGATGGTGAGGACAACTTTCGCTACTTCCTGGCCCAGATGGGCCGGTTCATCTGTCTTCGGGAGCTCAGCATTGGCTCTTCTCTCCTCTCAGGCAGGCTGGATCAACTGCTCAG
Seq A exon
GTGAGTGAGCCCTCCCATTGCCCCACCCCCTTTTCATGTGAGGACATTTCTGCTTGGCCTACCTGACATAACCCTTCTGTACCCCCTTTGTCCCCGCAG
Seq C2 exon
CACCCTGCAGAGGCCCCTGGAAAGCCTAGAGCTGGCCTTCTGTGCACTGTTGCCTGAGGACCTACGCTTCCTGGCTCAGAGCTCTCATGCTGCCCACCTCAAAAAGCTGGACTTGAGTGGCAATGACTTGTCAGGCAACCAGCTGACACCCTTCCAGGGTCTGCTGCAGGCAGTAGCAGCCACACTGCTGCATCTTGAGCTGACTGAGTGCCAGATTGCTGATGCCCAGTTGTTGGCCACACTGCCCACCCTGACTCGCTGTGCCAGTCTCCGATACCTTGGTCTCTATGGCAACCCTTTGTCTATGGCAGGACTTAAAGAGCTGCTTCGGGACTCTGTGATTCAGGCTGAGCTACGTACTGTGGTGCACCCTTTCCCTGTGGACTGCTATGAGGGTCTTCCTTGGCCGCCACCTGCCTCTGTCCTTCTGGAAGCCTCCATCAATGAGGAGAAGTTTGCCCGTGTAGAAGCTGAGTTACACCAGCTGCTGTTAGCTTCAGGCCGTGCCCATGTACTCTGGACCACAGACATCTATGGCCGGCTGGCTGCAGACTATTTTAACCTCTGATCTCCAGGTCTTGGTGAAGTCTTAGGTTTTCTGCAGAGTTTGCCTTTCTCCTGGGTACACCTTGAGTCACCTCTACTTTCTGCAGTGTCCTTCACCTGCTTATCTGGCTGCCTCTCGGTGTCTCAGGCCTGTGCTCCCCTGTTCTGTATGATGTACTTGATGGCTCTGCTGAGTTGCGGTGTCTCTGTAGAAAACGGTTCCTGGACACATCCCATGCCCTCAGCAGGGGTGCAGTACATTGAGGTAGATGTTAGGATGATCTGCTCCAGGGCATCTTTGGGTCTTATACTGTGTACCCTGCCTGGCACCCTAGTACCTGGCTCTGGAGGGTGTGAGTAAGGTACAAATGTGCAGTATCTGAAATGTGAATTTATGGGCTTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016128:ENSRNOT00000021673:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127992=LRR_4=WD(100=26.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTCTCTCCTCTCAGGCA
R:
GCCTGACAAGTCATTGCCACT
Band lengths:
176-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]