HsaINT0096638 @ hg19
Intron Retention
Gene
ENSG00000160959 | LRRC14
Description
leucine rich repeat containing 14 [Source:HGNC Symbol;Acc:20419]
Coordinates
chr8:145745622-145750559:+
Coord C1 exon
chr8:145745622-145746206
Coord A exon
chr8:145746207-145746294
Coord C2 exon
chr8:145746295-145750559
Length
88 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GACCCCTGTGTCCCCTGTAGCAC
3' ss Score
8.7
Exon sequences
Seq C1 exon
GAAGCATGCGCTGCGGGTGCTGGACATGACGGGCCTCTTGGATGATGGTGTGGAACAGGATCCTGGCACCATGAGCATGTGGGACTGTACTGCTGCCGTAGCTCGCACATGCATTGCCCAGCAGCAGGGTGGGGCCGCAGAGCCTGGGCCAGCCCCCATCCCCGTGGAGGTGCGCGTGGACCTGCGGGTGAACCGGGCCTCCTATGCGTTCCTGCGGGAGGCACTCCGAAGCAGCGTGGGCAGCCCGCTGCGGCTCTGCTGCCGGGACCTGCGAGCTGAGGACCTGCCCATGCGCAACACTGTGGCCCTGCTGCAGCTTCTGGATGCAGGCTGCCTGCGCCGCGTGGACCTGCGCTTCAACAATCTGGGCCTGCGCGGCCTGTCTGTGATCATCCCACACGTGGCCCGCTTCCAGCACCTGGCCAGCCTGCGGCTCCACTATGTGCATGGGGATTCAAGGCAGCCCTCCGTGGATGGCGAGGACAACTTCCGCTACTTCCTTGCCCAGATGGGCCGCTTCACCTGTCTGCGTGAGCTCAGCATGGGCTCCTCTCTCCTTTCAGGGAGGCTGGACCAGCTGCTCAG
Seq A exon
GTGAGCGGGCCCCACCACTGCCCTGCCCCTCCCTTCTGTAGGGACCCTCCCTGGCTCTGCCTGTCTGTGACCCCTGTGTCCCCTGTAG
Seq C2 exon
CACCCTGCAGAGCCCCCTGGAGAGCCTGGAGTTGGCCTTCTGTGCTCTGCTGCCTGAGGACCTACGCTTCCTGGCACGGAGCCCACATGCTGCCCACCTCAAGAAGTTGGACCTGAGTGGTAACGACCTGTCTGGCAGCCAGCTGGCACCCTTCCAGGGTCTGTTGCAGGCATCAGCAGCCACACTGTTGCATCTGGAGCTGACTGAGTGTCAGCTCGCAGACACCCAGCTGTTGGCCACACTACCCATCCTGACTCAGTGCGCCAGTCTCCGGTACCTTGGCCTCTATGGCAACCCACTGTCCATGGCGGGCCTCAAGGAGCTGCTGCGGGACTCAGTGGCACAGGCTGAGCTGCGTACTGTGGTGCACCCCTTCCCTGTGGACTGCTATGAGGGCTTGCCCTGGCCGCCGCCTGCCTCTGTCCTGCTGGAGGCCTCCATCAATGAGGAGAAGTTTGCCCGCGTAGAAGCTGAGTTGCACCAGCTGCTTCTAGCCTCAGGCCGTGCCCATGTGCTCTGGACCACGGACATCTACGGGCGACTGGCTGCGGACTACTTCAGCCTATGATGAAGTAGCTCTGGGTGAGACACAGGCCGCCCTGCAGTCTCTTTAGGTAGGCAGGGCCTTTGCTGGGACCCCTGGTGGAGGCCTTCACAAAAGCACTGGTTACTGGTTTCCTGCTGGGTCTACCTTGCTTCTGGGCACACCTCAAGCCTCCCCTGCTTTCTGCAGTGCCCCACGCGGTTTTCCCTGCACTTGCTCCATAATTGGCTGATCATCTGTGGGCCCCGGGGCTGGATGTCAGGCCTCCATTGCCCTGCTCAGTTTGGCTGCATTTGGCTGCCGTCTGGGGTCCTGGTCCTTTGTGCAAATGCTTTGGGATTCCAGTTGTGAGCTGAGAGAGATGATGGCCTCTCTGGGCCTTTCCTCTCCCTTTACTGAGAGCTCAGTGCTTCTGGGGTTGAAGTTGGACAGAGGCCTGCTTCAGGGAAGCTGGGAGTCCCCAGGCACTCACGCCTCTTACGTGTTCCCTACCCTGCCACCCAGCCACCCCACTGGGCTGGGCTCGGGCTGGAGGGGGTCATCAAGGTACACATGTGCCTGGAAGTTGAATTTGTGGCTGTTTTTTTTTCTGTCCACGTTGGTCACCCTTATCCTTATCTCTGCTGTCACCCCCAACATGGCCACCCGGCAACAACTGCCATCCAGCCTGTCGCCCCGCCCTTCGCGGGGCAGCCCCGTCGGCACTGCCGGCCAGTCCTTGCTCTTCCCACCTTTCGGAGGCCCAAGATCCTACTGTGGCCGGCCAGGGCCAGCGAGGGACCCCCCCCATGCAGAGCTGGAGGTTGGGGTGATGTCTTTTCGGAAGAGCTTCAAGGGAGGTGTTGGGGCCTCCCCGGCCACCTTCCATTGCTACCCCAGGATTCCCGAGTGCAACGTTCCCGGCTCGCGCCCCACACACGGCTCAGCGCACACTGCGCGGCTTCCACCTTTACTGACGGAGCATGCGCGAGGCCGCACCGGCCAATCTCCGGCGCCCACGTCATCCGCGCGCCCGCGGCCCTAGCAGTGGATCTCGTAGGCGACCGGCGGGGGCACGCGGAGTCCCGGCCCCGCCCCCTGTTCCGGGCCGCAGTCAGCGGGCGCCTCCGCCGGACCCTCGGCGAAGAGCGGCTTGGAGCGGTTGATGACGAACATCTCGTGGCCGCGCTCGTCGCGGAGCTCCTCTAGCTGTGCGAACGTACAGGGGCCGTCCAAGTAGTCGTTGACGAACAGCGCTCCCTCCCCCGGAGGCCCCCGCGCCTTTTTTCGCCTGCGGCGCCGGCGACAGATCATGGCGACCAGGAGCAGCGCCGTGAGCGCCAGCAGCGCGATGGCCGCCGCAATGGCCGTCTGTGTGGCCACGCCCAGGGCGCGGAAGGCCATGCTGCCCGCCTCGGGCCGGGGCTCGCTGCCGGCGGGGCGGGCGGCCGGAGGCGGCGGTTGCGCGGGCTGCTGCGGCTGCTGCCGGGACGCGTTGACCAGGAGCCGGAAGGGCACGCGGGCAGCGCCGCCGGCGTTGGAGGCCTCGCACTCGTACTTACCGGCGTGCGCCAGCGTGATGTTGCTGAGGAAGAGCATGCCGCTGCCCGTGTCGGATGCCGAGTGTCCGCCCAGGCCCAGCAACCCGCCTTCTAGCTGGGCCTGGGCTCGCGGCCGGCCCTCGCGAGGCTGGGGCACCTTTCTCCAGGTCACCAATGGCTGCGGGTAGCCGGAGGCTTGGCAGGCAACCCGCAGGTCCTCACCCAGGTTGGCTGTGAGCTCCAGCGGCTGCACGTGGACAGAGGGCGGAATGCAGATGAGGCTGCTGTGGGATACGTCCAGGAGACTCTGGAGCGCCAGGCGCGGGGGCTCTGCACACATGATCTTCCTGTCCCTGGAGGTGAGCAGCCGCTGGCCGCCCTCCTTGATCCAGGCACCCAGCCAGTGCAGGGCGCAGTCACAGCGCCATGGGTTCTCTGTGGGAGAGCAGCGTTAGGCAGGTGGCTTGAGGGTGCTGCTAAAACAGCCTGTGCAGTTGGGGTTTTGCAGGCCAGGACAGAGGCCTCTTTCCCACCTCCCACAGCGTTTTCACACGGAGTCCAAGGCCCTGCCACCCCTTCCTTGACCCCAAGCTCCTTGGGGCGGCAGGCCCTTCACCCTCGCCCCCCTCCCCTTTAGCTCTGTGATGCCTGCCTGTTACAGATCACTTCTCCGTCGGTCTCTGAGAAAGCACCTGCTCCTTAAGTCTTCCTGCAACAAGTGCCACTGTTTTTAGGAACCTGGGCGTCCACATAGACATCTCACCAGCACTGAAACCTCACAAGTCCTCTCAGCCTTGCCTTTGGATGCCCTCTCTTGGGAATGTCCCCAGTCCTGGTCAGCTGTCTCTCTCCTTTGCAATTTTGTCTGCCTCCCCTCAGCCTAAAAGTGTGCAGAACCCTCAATTCTGTTAAGTCACCCTGTGGAGTTCCTGTCTTCTGTTTTCCCCAGGCAGGGTGCCTGAGCTGTATTCCCCAGCACACCCACTCCCGCAGCCCTCCAGTGTGGCTGCAGGCGGTGGTGCAGCCTTCCAGACTGCTGCCCAGTTGCCTGATGTCAGAGCCCCTCCACACATGAGCCTGCTCCCTACTGCCAACACCGTGGCCCAGACAGAGACGCTTTCCGAGGAAGAGGTACCTGTGAGGCGCAGGACTTGCAGACTGGCCAGGGGCTGCAGGGCCTCTCGGCTGATGGTGCCCAGCTGGTTCCTGCTGAGGTCCAGCAGTGCTAGGGAGGACAGCCCCGCTAGAGCCTGGTCCTCCAGCAGCTCAATGCTGTTTTCTTGCAGGTGAAGCTCCTGCAGTCGCTGAAGTAAGGACAGCAGATCGTGAGGAAAAAGGGCGCCGAGGTTGGGGGCATGTCTCTCTTCTTACCAAGCTAGACTGGGTTGCCTTTTCTAACTATTCCAGCCCTACAGGGCGAGGGGCCATAATGGAGTATCCCGCCCCTTTAGACCCCAGGCGCTCACCGGCAGGTGCAAGAAGGTGAAATCCAGCAGCCGCGCCAGCTGGTTGCCCGCCAGGTAGAGCACGCGCAGCTGGGCCAGGCCTACGAAGGCGCCGCTGCGCAAGCCGCGCAGCCGGTTGCTAGTGAGCGCCAGCTCCAGCAGGCGCGGCTGCGCGCGGAAGGCGCCGGCCTCCAGGGCGCGCAGGCTGTTGTTGTGCAGGTAGAGCCGGCGCAGAGCGGCGAGTGGCGCCAGGGCTCCCGGCTCTAGGCGGGCGATGTTGTTGTCCTGCAGGAACAGTGTCTGCAGGCCGGGGAAAGAGGAGGCGCTTACCCCGTTGCGGGGGTCTTCCTCTCCCTGGGGGCACCCCGTCCTCCCGCAGCTCCACACGGTGCCCACCTGCGTCCCTGGCGGGATTCCCAGCGGGACGACGCGCAACCGCAGGGCGCCACACTCCACCGTGGCGCTGTAGCAGCGGCAGGCTGCTGGGCAGCCGGCGGCGCGGAGCGGCAGTAGTAGCAGCAGCAGCGGCAGCAGTGCGGGGGCCCTCAGGGCCATCTCCCGAGGCCCGGTTCCTCACCGGCCCTTCCGCGGTTCAGCCGCAGACGCGTGCCCTCCTGAAACACAGGTTGGCAGGCCAGTCTCGGCAGTCGAGAGCCAGCCAATAGATGGAATGGAGGCCTGCACCTGCGTCTAACTTTTGACGCTATAAATAGGTTCAAGAAACTAATAAAACGTTCTGGTTTTCTCCTTTGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160959-LRRC14:NM_014665:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138551=LRR_8=WD(100=36.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTACTTCCTTGCCCAGATG
R:
CAGGAAGCGTAGGTCCTCAGG
Band lengths:
168-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)