HsaINT0096638 @ hg38
Intron Retention
Gene
ENSG00000160959 | LRRC14
Description
leucine rich repeat containing 14 [Source:HGNC Symbol;Acc:HGNC:20419]
Coordinates
chr8:144520238-144525178:+
Coord C1 exon
chr8:144520238-144520822
Coord A exon
chr8:144520823-144520910
Coord C2 exon
chr8:144520911-144525178
Length
88 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GACCCCTGTGTCCCCTGTAGCAC
3' ss Score
8.7
Exon sequences
Seq C1 exon
GAAGCATGCGCTGCGGGTGCTGGACATGACGGGCCTCTTGGATGATGGTGTGGAACAGGATCCTGGCACCATGAGCATGTGGGACTGTACTGCTGCCGTAGCTCGCACATGCATTGCCCAGCAGCAGGGTGGGGCCGCAGAGCCTGGGCCAGCCCCCATCCCCGTGGAGGTGCGCGTGGACCTGCGGGTGAACCGGGCCTCCTATGCGTTCCTGCGGGAGGCACTCCGAAGCAGCGTGGGCAGCCCGCTGCGGCTCTGCTGCCGGGACCTGCGAGCTGAGGACCTGCCCATGCGCAACACTGTGGCCCTGCTGCAGCTTCTGGATGCAGGCTGCCTGCGCCGCGTGGACCTGCGCTTCAACAATCTGGGCCTGCGCGGCCTGTCTGTGATCATCCCACACGTGGCCCGCTTCCAGCACCTGGCCAGCCTGCGGCTCCACTATGTGCATGGGGATTCAAGGCAGCCCTCCGTGGATGGCGAGGACAACTTCCGCTACTTCCTTGCCCAGATGGGCCGCTTCACCTGTCTGCGTGAGCTCAGCATGGGCTCCTCTCTCCTTTCAGGGAGGCTGGACCAGCTGCTCAG
Seq A exon
GTGAGCGGGCCCCACCACTGCCCTGCCCCTCCCTTCTGTAGGGACCCTCCCTGGCTCTGCCTGTCTGTGACCCCTGTGTCCCCTGTAG
Seq C2 exon
CACCCTGCAGAGCCCCCTGGAGAGCCTGGAGTTGGCCTTCTGTGCTCTGCTGCCTGAGGACCTACGCTTCCTGGCACGGAGCCCACATGCTGCCCACCTCAAGAAGTTGGACCTGAGTGGTAACGACCTGTCTGGCAGCCAGCTGGCACCCTTCCAGGGTCTGTTGCAGGCATCAGCAGCCACACTGTTGCATCTGGAGCTGACTGAGTGTCAGCTCGCAGACACCCAGCTGTTGGCCACACTACCCATCCTGACTCAGTGCGCCAGTCTCCGGTACCTTGGCCTCTATGGCAACCCACTGTCCATGGCGGGCCTCAAGGAGCTGCTGCGGGACTCAGTGGCACAGGCTGAGCTGCGTACTGTGGTGCACCCCTTCCCTGTGGACTGCTATGAGGGCTTGCCCTGGCCGCCGCCTGCCTCTGTCCTGCTGGAGGCCTCCATCAATGAGGAGAAGTTTGCCCGCGTAGAAGCTGAGTTGCACCAGCTGCTTCTAGCCTCAGGCCGTGCCCATGTGCTCTGGACCACGGACATCTACGGGCGACTGGCTGCGGACTACTTCAGCCTATGATGAAGTAGCTCTGGGTGAGACACAGGCCGCCCTGCAGTCTCTTTAGGTAGGCAGGGCCTTTGCTGGGACCCCTGGTGGAGGCCTTCACAAAAGCACTGGTTACTGGTTTCCTGCTGGGTCTACCTTGCTTCTGGGCACACCTCAAGCCTCCCCTGCTTTCTGCAGTGCCCCACGCGGTTTTCCCTGCACTTGCTCCATAATTGGCTGATCATCTGTGGGCCCCGGGGCTGGATGTCAGGCCTCCATTGCCCTGCTCAGTTTGGCTGCATTTGGCTGCCGTCTGGGGTCCTGGTCCTTTGTGCAAATGCTTTGGGATTCCAGTTGTGAGCTGAGAGAGATGATGGCCTCTCTGGGCCTTTCCTCTCCCTTTACTGAGAGCTCAGTGCTTCTGGGGTTGAAGTTGGACAGAGGCCTGCTTCAGGGAAGCTGGGAGTCCCCAGGCACTCACGCCTCTTACGTGTTCCCTACCCTGCCACCCAGCCACCCCACTGGGCTGGGCTCGGGCTGGAGGGGGTCATCAAGGTACACATGTGCCTGGAAGTTGAATTTGTGGCTGTTTTTTTTTCTGTCCACGTTGGTCACCCTTATCCTTATCTCTGCTGTCACCCCCAACATGGCCACCCGGCAACAACTGCCATCCAGCCTGTCGCCCCGCCCTTCGCGGGGCAGCCCCGTCGGCACTGCCGGCCAGTCCTTGCTCTTCCCACCTTTCGGAGGCCCAAGATCCTACTGTGGCCGGCCAGGGCCAGCGAGGGACCCCCCCCATGCAGAGCTGGAGGTTGGGGTGATGTCTTTTCGGAAGAGCTTCAAGGGAGGTGTTGGGGCCTCCCCGGCCACCTTCCATTGCTACCCCAGGATTCCCGAGTGCAACGTTCCCGGCTCGCGCCCCACACACGGCTCAGCGCACACTGCGCGGCTTCCACCTTTACTGACGGAGCATGCGCGAGGCCGCACCGGCCAATCTCCGGCGCCCACGTCATCCGCGCGCCCGCGGCCCTAGCAGTGGATCTCGTAGGCGACCGGCGGGGGCACGCGGAGTCCCGGCCCCGCCCCCTGTTCCGGGCCGCAGTCAGCGGGCGCCTCCGCCGGACCCTCGGCGAAGAGCGGCTTGGAGCGGTTGATGACGAACATCTCGTGGCCGCGCTCGTCGCGGAGCTCCTCTAGCTGTGCGAACGTACAGGGGCCGTCCAAGTAGTCGTTGACGAACAGCGCTCCCTCCCCCGGAGGCCCCCGCGCCTTTTTTCGCCTGCGGCGCCGGCGACAGATCATGGCGACCAGGAGCAGCGCCGTGAGCGCCAGCAGCGCGATGGCCGCCGCAATGGCCGTCTGTGTGGCCACGCCCAGGGCGCGGAAGGCCATGCTGCCCGCCTCGGGCCGGGGCTCGCTGCCGGCGGGGCGGGCGGCCGGAGGCGGCGGTTGCGCGGGCTGCTGCGGCTGCTGCCGGGACGCGTTGACCAGGAGCCGGAAGGGCACGCGGGCAGCGCCGCCGGCGTTGGAGGCCTCGCACTCGTACTTACCGGCGTGCGCCAGCGTGATGTTGCTGAGGAAGAGCATGCCGCTGCCCGTGTCGGATGCCGAGTGTCCGCCCAGGCCCAGCAACCCGCCTTCTAGCTGGGCCTGGGCTCGCGGCCGGCCCTCGCGAGGCTGGGGCACCTTTCTCCAGGTCACCAATGGCTGCGGGTAGCCGGAGGCTTGGCAGGCAACCCGCAGGTCCTCACCCAGGTTGGCTGTGAGCTCCAGCGGCTGCACGTGGACAGAGGGCGGAATGCAGATGAGGCTGCTGTGGGATACGTCCAGGAGACTCTGGAGCGCCAGGCGCGGGGGCTCTGCACACATGATCTTCCTGTCCCTGGAGGTGAGCAGCCGCTGGCCGCCCTCCTTGATCCAGGCACCCAGCCAGTGCAGGGCGCAGTCACAGCGCCATGGGTTCTCTGTGGGAGAGCAGCGTTAGGCAGGTGGCTTGAGGGTGCTGCTAAAACAGCCTGTGCAGTTGGGGTTTTGCAGGCCAGGACAGAGGCCTCTTTCCCACCTCCCACAGCGTTTTCACACGGAGTCCAAGGCCCTGCCACCCCTTCCTTGACCCCAAGCTCCTTGGGGCGGCAGGCCCTTCACCCTCGCCCCCCTCCCCTTTAGCTCTGTGATGCCTGCCTGTTACAGATCACTTCTCCGTCGGTCTCTGAGAAAGCACCTGCTCCTTAAGTCTTCCTGCAACAAGTGCCACTGTTTTTAGGAACCTGGGCGTCCACATAGACATCTCACCAGCACTGAAACCTCACAAGTCCTCTCAGCCTTGCCTTTGGATGCCCTCTCTTGGGAATGTCCCCAGTCCTGGTCAGCTGTCTCTCTCCTTTGCAATTTTGTCTGCCTCCCCTCAGCCTAAAAGTGTGCAGAACCCTCAATTCTGTTAAGTCACCCTGTGGAGTTCCTGTCTTCTGTTTTCCCCAGGCAGGGTGCCTGAGCTGTATTCCCCAGCACACCCACTCCCGCAGCCCTCCAGTGTGGCTGCAGGCGGTGGTGCAGCCTTCCAGACTGCTGCCCAGTTGCCTGATGTCAGAGCCCCTCCACACATGAGCCTGCTCCCTACTGCCAACACCGTGGCCCAGACAGAGACGCTTTCCGAGGAAGAGGTACCTGTGAGGCGCAGGACTTGCAGACTGGCCAGGGGCTGCAGGGCCTCTCGGCTGATGGTGCCCAGCTGGTTCCTGCTGAGGTCCAGCAGTGCTAGGGAGGACAGCCCCGCTAGAGCCTGGTCCTCCAGCAGCTCAATGCTGTTTTCTTGCAGGTGAAGCTCCTGCAGTCGCTGAAGTAAGGACAGCAGATCGTGAGGAAAAAGGGCGCCGAGGTTGGGGGCATGTCTCTCTTCTTACCAAGCTAGACTGGGTTGCCTTTTCTAACTATTCCAGCCCTACAGGGCGAGGGGCCATAATGGAGTATCCCGCCCCTTTAGACCCCAGGCGCTCACCGGCAGGTGCAAGAAGGTGAAATCCAGCAGCCGCGCCAGCTGGTTGCCCGCCAGGTAGAGCACGCGCAGCTGGGCCAGGCCTACGAAGGCGCCGCTGCGCAAGCCGCGCAGCCGGTTGCTAGTGAGCGCCAGCTCCAGCAGGCGCGGCTGCGCGCGGAAGGCGCCGGCCTCCAGGGCGCGCAGGCTGTTGTTGTGCAGGTAGAGCCGGCGCAGAGCGGCGAGTGGCGCCAGGGCTCCCGGCTCTAGGCGGGCGATGTTGTTGTCCTGCAGGAACAGTGTCTGCAGGCCGGGGAAAGAGGAGGCGCTTACCCCGTTGCGGGGGTCTTCCTCTCCCTGGGGGCACCCCGTCCTCCCGCAGCTCCACACGGTGCCCACCTGCGTCCCTGGCGGGATTCCCAGCGGGACGACGCGCAACCGCAGGGCGCCACACTCCACCGTGGCGCTGTAGCAGCGGCAGGCTGCTGGGCAGCCGGCGGCGCGGAGCGGCAGTAGTAGCAGCAGCAGCGGCAGCAGTGCGGGGGCCCTCAGGGCCATCTCCCGAGGCCCGGTTCCTCACCGGCCCTTCCGCGGTTCAGCCGCAGACGCGTGCCCTCCTGAAACACAGGTTGGCAGGCCAGTCTCGGCAGTCGAGAGCCAGCCAATAGATGGAATGGAGGCCTGCACCTGCGTCTAACTTTTGACGCTATAAATAGGTTCAAGAAACTAATAAAACGTTCTGGTTTTCTCCTTTGACAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160959:ENST00000292524:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138551=LRR_8=WD(100=36.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTACTTCCTTGCCCAGATG
R:
CAGGAAGCGTAGGTCCTCAGG
Band lengths:
168-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development