MmuINT0092828 @ mm9
Intron Retention
Gene
ENSMUSG00000033728 | Lrrc14
Description
leucine rich repeat containing 14 [Source:MGI Symbol;Acc:MGI:2445060]
Coordinates
chr15:76543831-76545521:+
Coord C1 exon
chr15:76543831-76544415
Coord A exon
chr15:76544416-76544509
Coord C2 exon
chr15:76544510-76545521
Length
94 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TAACCTCTTTGTCCCTGCAGCAC
3' ss Score
10.62
Exon sequences
Seq C1 exon
GAAGCATGCATTGCGGGTTCTGGACATGACGGGTCTCCTGGATGATGGTGTGGAGCAGGATCCTGAAACCATGAGCATGTGGGACTGTACAGCCGCTGTAGCCAGAACGTGCATTGCCCAGCAGCAGGGTGGGACTGCCGAGCCAGGGCTGTCACCAGTCCCCGTGGAAATCCGAGTAGACCTTCGGGTAAACCGGGCCTCGTACACATTCCTTCGTGAGGCCCTCCAAAGCAGTGTGGCCAGCCCGCTGCGGCTGTGCTGCCGGGACCTGCGGGCTGAGGATCTACCCATGCGTAACACTGTGGCCCTGCTACAGCTTTTAGATGCAGGCTGTCTGCGCCGGATAGACCTGCGCTTCAATAACCTGGGCTTGCGTGGCCTGTCTGTCATTATCCCACATGTGGCCCGCTTTCAGCACTTAGCTAGCCTGAGGCTGCACTACGTGCATGGGGACTCAAGACAGCCTTCCGTGGACGGGGAGGACAACTTTCGCTACTTTCTGGCCCAGATGGGCCGGTTTATGTGTCTTCGGGAGCTCAGCATGGGGTCTTCTCTCCTTTCAGGCAGGCTGGATCAACTGCTCAG
Seq A exon
GTGAGTGGGCTCTCCCGCTGCTCTCCCTCTTTTATGTGAGGCCATTCTTGGCCTACCTGCCCGTGACCCTTGTGTAACCTCTTTGTCCCTGCAG
Seq C2 exon
CACCCTGCAGAGGCCCCTGGAAAGCCTAGAACTGGCCTTCTGTGCGCTCTTGCCTGAGGACCTACGCTTCCTGGCTCAGAGTTCTCATGCTGCCCATCTCAAAAAGTTGGATTTGAGTGGCAACGACCTGTCAGGCAACCAGTTGACACCCTTCCAGGGTCTGCTGCAGGCAGTAGCCACCACACTGCTGCATCTTGAGCTGACTGAGTGCCAGCTTGCTGATGCCCAGCTGTTGGCTACCCTGCCCACCCTCACTCGATGTGCCAGTCTCCGCTACCTTGGTCTCTATGGCAACCCTTTGTCTATGGCAGGACTTAAAGAACTGCTTCGGGACTCTGTGGTACAGGCTGAGCTACGTACCGTGGTACACCCCTTCCCTGTGGACTGCTATGAGGGTCTTCCTTGGCCACCACCTGCCTCTGTCCTTCTGGAAGCCTCCATCAATGAGGAGAAGTTTGCCCGGGTGGAAGCTGAGTTACACCAACTGCTGTTAGCTTCGGGCCGTGCCCATGTGCTCTGGACCACAGACATCTATGGCCGGCTAGCTGCAGACTATTTTAGCCTCTGATCTCCAGGGTCGTAGTGAAGCCTGACACAAAGGCTCTGTCTTAGGTTTTCTGCAGTTTGCCTTTCTCCTGGGTATACCTTGAGTCACTTCTGCTTTCTGCAGTACCCTTCACCTGCTCCCAGTATCTGGCAGCCTGTTGCTATCTCAGGCCTGTGCGCCCCTGTTCTGTTTGATGTACTTGTTGGCTCTGTTGGGTTGTAGTCTCTCTGTAGAAAACGCTTCCTGGACACATCCCATGCCCTAAGCAGGCATGCAGTGCACTGAGGTAGATGTCAGGGTGATCTGCTTCAGGGCATTTTGGGGTCTTACATTGTGTACCCTGCCTGGCACCCTATTACCTGGCTCTGGAGGGTGTGGATAAGGTACAAACGTGTAGTATCTGGAATGTGAATTTATGGGCTTTTTTGATGTGTGTCCTAATTGGATGGGAAAGACTTACCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033728-Lrrc14:NM_145471:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127992=LRR_4=WD(100=26.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCTGGATCAACTGCTCAG
R:
GTGTCAACTGGTTGCCTGACA
Band lengths:
170-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: