BtaINT0087708 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012844 | LRSAM1
Description
Bos taurus leucine rich repeat and sterile alpha motif containing 1 (LRSAM1), mRNA. [Source:RefSeq mRNA;Acc:NM_001075296]
Coordinates
chr11:98199420-98200750:+
Coord C1 exon
chr11:98199420-98199464
Coord A exon
chr11:98199465-98200672
Coord C2 exon
chr11:98200673-98200750
Length
1208 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CGAAACTCTTTCCCACGCAGGTG
3' ss Score
8.59
Exon sequences
Seq C1 exon
ATTCCATTTGGGGCTTTTGCAACATGTAAAGTTCTGCAGAAGAAG
Seq A exon
GTGAGACGGATCTACGTTTTCAGAAAATTATTCATGGCATGTTTGCTTGTTTGAAATCAGGCGGGGATCCTGGCGTAGACATCCCTCTTCTCTTTGAATGGCACACTTTCCACCTGCAGCAGGTGTCCTCACAGGGGAGCAGGCCCTGGCATCAGGCAGCTCTGGCTGGGCCCCTCCTGAATTGGGCAACTTCCTTACACTCTTACATCTCAGTTTCTCCATCTGTGAAAGGAAGACATCCGTCGTTCTCCACTCGCAGAGCTATTATGAGAATTAAACGAGTGACAGGGAGGTAGAGATAAAGATGTAAATGGCCTGAGTAGAGTGCCTGCCACATAGTGGACACTGAATAACCACATTGTTATTAATAGTAAAAATCACACTCATTTCATTTTGGTCAATTAGGGAAGGTTAAGAGTGGAATGAATGATTTTTCAGAAAGGCATTGCAGCCTTGAATGCAGGTAGGTAACAGTATTCTAAATGAAGTGTCTAAGAGCAGGTAGGTAAAATGTGTTCTATGCCAACAGGAGTGGCTTGACATTGGAAGTATCCATGCAGGTGTCAACGCCTAACAAAAATAGTAGCATGTGACTCTGATTGAGCGTCTGACCATGTCCCAGCCCTGGGCTGAGTGCTTACTGTCTGTTAGCTTGTTAGCAGCCCTCAGAGGCAGGAGTTTATCATTCTCTGTTTTCCACAAGGGGCTTCCCTGGTAGCTCAGTGCTAGAGAATCCACCTGCTGATGCAGAGTTCGATCCCTGGGTCAAGAAGGTCCCCTGGAGAAGGAAATGGCAACCCACTCCAATATTTTTTCCTGGAGAATCCTGTGGACAGAAGAGCCTAGTGGGCTACAATCCATGGGGTCACAAAGAGTCAGACACGACTGAGAGACTAGACAACATCAACAACATTTTCCACAAGATGCTGCTGAAGCTGAGGGACGTTAAGGTCGGGACAGCTGCAAGGGGATCCCTTCTCAGGATGGAAGGAAGAATTAGACCTCTGAGGTCCCTTTCAGTCTTGAGATTCCAGAGTTTAAGGTCATCTGGTTTTCCCGTGTTTGGAAACGTCGCTTGTGATGTCCACAGGAGAGAGCACTGGGCCGGGCTGACTGCTGGTGTCCAGTGTGTGCCAGCTGCCCCGCCTCCAGCCCCCCTCCCTGCAGCTCTCCTTCAGCCTAACATGCCGAAACTCTTTCCCACGCAG
Seq C2 exon
GTGTTGATCGTCCACACAAATGTGCTCACCTCCCTGCTCCCTAAATCCTGCAGCCTCCTGAGTCTCGCCACCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012844:ENSBTAT00000017067:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127992=LRR_4=PU(6.5=11.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development