MmuINT0093485 @ mm9
Intron Retention
Gene
ENSMUSG00000026792 | Lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:MGI Symbol;Acc:MGI:2684789]
Coordinates
chr2:32811995-32812813:-
Coord C1 exon
chr2:32812769-32812813
Coord A exon
chr2:32812073-32812768
Coord C2 exon
chr2:32811995-32812072
Length
696 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCTCCCCCCTTTCCTCCTAGGTG
3' ss Score
12.68
Exon sequences
Seq C1 exon
ATTCCATTTGGGGCTTTTGCAACGTGCAAAGTTCTACAGAAAAAG
Seq A exon
GTGAGCAGTCTTGTTCAGACTCACTTGCTGGATGTCTGCTTGGGGGAACCACATGAGACTTAGAGGAACCCTCATTCCCCCCACACACACACCACCACCAGTGCCATTAATAGAAAGGACACTCAATGCGTTCCGCCACTCCCTCAGTTAGAAGGAGATGAAAGTGTTTACACACAGGTGGATACATGAACACCACCAGGTCTGGAAACGTGCTCCCTGCCTATAGTGCATCAAAATTCTTACCTCTGAGCAGGAGTTAACGTCTAACAAAAACAGCCATGGTTGACACAGGCTGAGTAACAATCACATGACAGCCTGGGATAAACACTAACTATTCAGCCTGTTAGCTTATTAGTTGTCATGGCCGCCCTTGCAGAAAGGCACTTTACTACTCCATGGAGCAGGAAAGGTCAAGCTCTTGATAGCTGACCCCTTCTCAGAATCAAAGGATAGCTAGACTCCCAGACTCCCTTTCACCCTAGGACTTCCAGCCCTCTGAGTCAGGTTCAGAAGTGCCCACGGAGCACAACATGGCCGCCCTGTGCCAAGCCAATTACCTTGCCCTTAGGCCCTTAGCCTTCCTGTCTGCTGCTCTCTTACAGTGTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCTTTCTCCCCCCCTCTCCCTCTCCCTCTCTCTCCCCTCCCCCCTTTCCTCCTAG
Seq C2 exon
GTGTTGATTGTCCATACAAACCACCTCACCTCCCTGCTTCCCAAGTCCTGCAGCCTCTTGAGCCTTGTCACCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026792-Lrsam1:NM_199302:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=PD(50.0=86.7)
A:
NA
C2:
PF138551=LRR_8=PD(46.2=92.3),PF127992=LRR_4=PU(6.5=11.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: