GgaINT0124708 @ galGal3
Intron Retention
Gene
ENSGALG00000008819 | LRSAM1
Description
NA
Coordinates
chr17:1946609-1947172:-
Coord C1 exon
chr17:1947128-1947172
Coord A exon
chr17:1946687-1947127
Coord C2 exon
chr17:1946609-1946686
Length
441 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
ATGGGTTTTTCCCTCCTCAGGTG
3' ss Score
10.09
Exon sequences
Seq C1 exon
GTTCCATACGGGGCCTTTGCAACTTGTAAGGTCTTGCAGAAAAAG
Seq A exon
GTAATGATACAGTCCCAAAGTAGATAATTCTATTATTGTGCATGAATGTTGCTGTTGTATTTGAGAGGATTGTTTCTGACTGTTTGTTTGCTTCAGGAGAAGTTTGTCTGTGATGAATTTGGCCGTCTGTATGATACTACCTGAAGAGCAGTTTGGGCAGGACTAATCTGTTGTGTGTGCTTTAGCGCTTCTGTCGTGAAAGATGAGATGATGATTTCCATCTTGACCTAATTAATGATATTTCTCAGAAAAATTAACTGAAATTCTGTTTAATATTAAATATTTGACCTCTACAACTCATTTACTATTTCACTGTTTTAGAGGACTCTGAATAAGATGCAAAATTCTTATACAACCTCTGCAATTAAGTCTTAGCAAAAGTCTTATTCTGGACTGTGGTGCCTCTTATGCTCATGTTTCAATGGGTTTTTCCCTCCTCAG
Seq C2 exon
GTGCTGATTATTCATACAAATAATCTTACATCTTTAGTTCCAAAGTCCTGTAGCCTCCTGAGTCTCATAACTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008819:ENSGALT00000014334:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127992=LRR_4=PU(6.8=11.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]