BtaINT0089941 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008755 | MARCH7
Description
Bos taurus membrane-associated ring finger (C3HC4) 7 (MARCH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001100317]
Coordinates
chr2:36697193-36701499:-
Coord C1 exon
chr2:36700392-36701499
Coord A exon
chr2:36697363-36700391
Coord C2 exon
chr2:36697193-36697362
Length
3029 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
3' ss Seq
AAATATACTGTCTTTTCCAGCCT
3' ss Score
7.03
Exon sequences
Seq C1 exon
GTGTTCAAGACAGAGTTCCTTCTTCATATTCACAAGGAGCAAGACCAAAAGAGAACTCATTGAGCACTTTACAATTGAGTGCATCATCTACTAACCACCAAATGCCTTCTGAACATCAAACCATACCATGTTCTAGGGACTCTGGTAGAAATTCTTTAAGATCAAATTTTTCTCCAAGAGAATTAGAATCTCCCCAAAGCAGTATGCAGCCTGGATTTTCTTATACTTCAAATAGAGGTGAAACCTCAACTATAGGCAGTTCAGATAGGATTAACTCATCTCACAGATCATTTCAAGAATCTTCTGACAATGAAGGTAGACGCACAACAAGGAGATTGCTGTCACGTATAGCTTCTAGTATGTCATCTACTTTTTTTTCACGAAGGTCTAATCAAGACTCCTTGAATACAAGGTCATTGAGTTCTGAAAATTCTTATGTTTCTCCAAGAATCTTGACAGGTTCTCAGTCTCGTGGTAATGCAGCATCAGCCTCTGATATTCCTGATAATAGGGCATCCGAAGCTTCTCAGGGATTTCGATTTCTTCGGCGAAGGTGGGGTTTGTCATCTCTTAGCCAAAATCATAACTCTGAGCCAGATTCCCAAAATTTTAGCCAAGAATCTGAAGGCAGAAATACAGGACCATGGTTATCTTCCTCACTTAGAAATAGATGCACACCTTTGTTCTCTAGAAGGAGGCGAGAGGGACGAGATGAATCTTCAAGGATATCTACCTCTGATATACCATCTAGATCTCATCATCTTTTTAGAAGAGAATCAAATGAAGTGGTTCACCTTGAAGCACAGAGTGAGCCCCTTGGGGCTGGTGCCAACAGACCGCAGGCATCTGCAGCACCAAGCAGTGTTGGTACAGGTGACTCCCCCTCAGATTCAACTCGGAGCGGACGAAGTACAGGGATAACGGGGATCCTTCCTGGTTCCTTATTTCGATTTGCAGTGCCCCCAGCACTTGGAAATAATTTGACTGATAATGTTATGATCACTGTAGATATTATTCCTTCAGGGTGGAGTTCATCTGATGGAAAAAATGATAAAACTAAAAATGTACCTTCAAGAGACCCAGAAAGACTACAGAAAATAAAAGAGAG
Seq A exon
GTAAGTTTGAATACATGTCTTAAGCCTGTAAAGCAGTAACAGATTAAAGAAAGAACTGTTTGTTTCTAAAATGGTTTCTCATAAGAGTGATGTCTGAATTTTCTTCCTTTAAAATTTACATCCAGTAAGATGTTAGTATCTTGCTCAGAGGTAAAATGGATGAGAATTAATTCTAGAGGTAGGTACTGGGGGTGTAAATTGCATCGGGAAATAATCTGAAGGTTGTTTTTAACCAGCTTTGGACACAGATACGTATGGAGACAAAAGGCCTTAATCTCTTACCCTTTGTCTTGGTAGGCTAGTGCTACATGGAATTGGTTAAGTTGACCCAAGTGGTCATATGTATCAAGACAATATTTCACCTTTTAATAAGATCATTTATTTACCATTTATTTATATTTCTGATTTCAAATCTTTTTTGGGATGAGGTAAAATCACAGATTTTTAAATTTTTTTAAAGTCTAAATGTATGCTGAATTACTGTGACTGACAGAAATGTCAATTTAAATTCAGAACTTAGAATTTTTTATTCATATGAAATCTTCTGTAGAGTTTAGATTGCTTAAAAATCTCTGGGAAAAGATGAAAGATCAGAGATTTTCAGTCCAACTTAATTATTTTGTCGTGTTAATATTGTTGCTTAGTTTTTCCATGTATTACTTTTATGATGAAATAGGATAGGATGCTGCTGCTGCTGCTGAGTCGCTGCAGTCGTGTCCGACTGTGCTAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGTAAAGTGAAAGTGAAGTGGCTCAGTCACGTCCGACTCGTAGCGACCACATGGACTGCAGCCTACCAGGCTCCTCCGCCCATGGAATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTCTCCAATAGGATAGGATAGTGCACATAAAATATACTTGTAAGAAGAAAAGACTTACGTAATGCTAAGGTCGTTGGGTGTTTTTGGTTTTTGTTTTTTCTTATTCATAAAGGCCCCAGTAATGAAATTGTTGGGGAGCATAGTTGTTAGTATCACTTTAGATTCTTTTTTGTTTTTAACAAGAAACAATTCAAATCTTACTCTGGGTAATAAAGGAAGCTTCATATGCTTTCTAAGATAGTGAACATAGACGAGTATGTTTCCACTTTTCCTTAGAAAAAACAAATTGTACCAAGTAAAGATTCCCTTAAAATTTGCTTTTTCTCCTTTCGTAGAGAAGAGTTTATTCTGCTGTGGTAGTGTTAGGTTTAATGTTATAGGAGCAGCCTCTATTTGTGAACAGTCTACTGAGTAATATAGTAAGTACTATATTTCTTATGCTCAAAGTGAGATTAATTTGAGTGCAGTAGTGTAAGTAGGCAGAGCATTAGTTTACTGATGTCCAAAGAGTAACCAATTAAGCCAGCACTGCCCTGTCTAGTTAGCTAGTTGAAAAGCACATTTGTTGGGGTATTTTGACATGGAGTTTATATGTGGGTGTTCCTTTATTATGTTTTTCATTTATACATGAGGATTATAATATACTTTACAATTAAATGAATAAAAGTGTAAAAAAATGGACTCTCCCAGAGTAAAAACTCAGAGCCAAAGAAAGTCACATCTGAAGGTAAAACATAAGGATTAACATTCAAGGGGCTTCCCTGGTGGCTTAGTGGTAGAATCTGCCTGCCAGAGCAGTAGACACAGATTGGATCCCTGGTCCAGGAAAATCCCACATGCCACACAGCAACCAAGCCCATGCGCCACAATTACTGAGCCTGTGTTCTAGAGTCCAGGAGCCGCAACTACTGGAGTCTGCACGCCCAGATCCTATGCTGTGCAGCAAGAGAAGCCCCCTCAGGGAGAAGTCTGCACACGACAGCTAGAGTAGCTCCCATTCACGGCAACTAGAGAAAAGCCCATGCAGCAACAGAGACTCAGCCAAAAATAAATAATAACTGTTTAGAAAAAACAAAGATTAATACTTGAGGTTATATCTCTGGTTAAGTCTAGGTATGGAAGTCACCTCAAAGTACATCTGTTTCTCTTTGCACAAATCTTTTGCTAAACTCATATGGAACCCATATAATATAATCCAGGTTGTATTTCAGTTAATGTTTAGTATTCTGTATCATCAATTTATTGAGTACCTTTTTTGTGTCAGCAGTGGACTAAGGTGAGAGATTTAACCAAAAAAATTACTTGTTCTATAGTGATCATTTCTGCATTTAAAGAAGCAGTACATGTTGGCCTGTGAAATAGAGGATGATGTGGGTTAATGGGAACTACTCCACACTTTAAAATCCTAACCTTAAAGAAATGAGAATGATTTACTAACATTACTAGGGGTGGGGAAAATGAGGAATTTTAAAATCTATTGTTTTGATTTTATTATGATTTAATATAAAACTTTATCAGTTTAAACATAACGTGGTTCTGAGGTGAGGTGAAGTCATTCAGTCGTGTCCGACTCTTTGCAGCCCCATGAACTGTAGCCTCCTAGGCTCCTCCATCCATGGGATTTTCCAGGCAAGAGTACTGGAGTGGGTTGCCATTTCCTTCTCCATAACGTGGTTCTAACAACATGTAAATTGAAAAATCACAAGTCAATGTTTAATTCATCAAAGTTGTCTTAAAGTTTTGAGGGGACAAAAGTAATGGGTATATATGTACATTATCTTTATACTCCTGGAATTGAAGTAATCTGTGATATTGCAGAAATTAAAATCTTAATGAAACTTATAAATTATGAAAGCTGTGGAACTTAAGCTGTGGTACCAAGGACAGAATTACTTTAAATTGTTTGAAGATAAGTAATAGGGTAGCCTATTTGATTTCTTTTAAAATATTACATTTTTTACTCTTGTTGAAAGTATTTTTCCTGTAGTTGCTATTTATTATTGTTATTGTTTGCCTTTTTTCTACCCAGAGAGACCATGATATATTTTGGAATTATGTATGACTAGAAATGACCAACCAGGATGAGTTTTGATAGCTCTGTTTAGGAAATATACTGTCTTTTCCAG
Seq C2 exon
CCTCCTTTTAGAGGACTCTGAAGAAGAAGAAGGTGATTTATGTAGAATTTGTCAGATGGCAGCTGCATCATCCTCTAACTTGCTGATAGAGCCATGCAAGTGCACCGGAAGTTTACAGTATGTCCACCAAGAGTGTATGAAGAAATGGTTACAGGCCAAAATTAACTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008755:ENSBTAT00000011533:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.823 A=NA C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF129062=RINGv=PU(76.8=74.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]