RnoINT0089729 @ rn6
Intron Retention
Gene
ENSRNOG00000006241 | March7
Description
membrane associated ring-CH-type finger 7 [Source:RGD Symbol;Acc:1308993]
Coordinates
chr3:46309629-46312603:+
Coord C1 exon
chr3:46309629-46310724
Coord A exon
chr3:46310725-46312430
Coord C2 exon
chr3:46312431-46312603
Length
1706 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TTATGTGCCTTCCCTTTCAGCCT
3' ss Score
10.3
Exon sequences
Seq C1 exon
ATGTTCAAGAAAGAGTTCCTTCTTCATATTCACAGGGAGCAAGACCAAAAGAGAATGCCGCGAACACTTTACAGTTGAATTCATCCACCAATCACCAACTGCCTTCTGAGCATCAGACAGTACCAAGTTCTAGGGACTCTAGTAGAAGTTCTTTCAGATCCCATTTTTCTCCAAGACAATCAGAATCTTTTCGAAACAGTTCACATCCTGCATTTTCATATCTTTCAAGTAGAAATGAAACTCCAACTATAAGCAGTTCAGAAAGGGCTGGCTCGTCTCAGAGACCATTTCAAGAATCTTCTGACAATGAAGGTAGGCGTACAACTAGGAGATTGCTGTCACGGATAGCTTCTAGCATGTCATCTACCTTCTTTTCACGAAGATCTAGTCAAGATTCCTTAAATACAAGGTCACTGAGTTCCGAAAATTATATTTCTCCAAGAACCCTGACTTCACAGTCTCGGAATAATGGAGCATCATCTTCTGAAGTTAATGATGGCAGGGCGTCTGAAGCGTCTCAGGGATTTAGGTTTCTTAGGCGAAGATGGGGTTTGTCGTCTCTTAGCCAGAATCATAGCTCTGAACCAGATGCAGAAAACTTTAACCAAGAATCAGAAGGTAGAAATACAGGACCATGGTTGTCTTCCTCACTTAGAAATAGATGCACACCTTTGTTCTCTAGAAGGAGGCGAGAGGGAAGAGATGAGTCTTCAAGAATATCTCCATCAGATGTACCTCCTAGATCTCATCTTTTCAGAAGAGAATCAAATGAAGTAGTTCACCTTGAAGCACAGGGGGACTCCCTTGGGGCAGCTGCCAGCAGACCACAAGCATCCGGAGCATCAGGCAATGCTTCTGCAAGTGGATCCACACCAGATTTGCCACAGGGTGGAAGAAATACAGGAATAGCAGGGATCCTTCCTGGCTCCTTATTCCGGTTTGCAGTTCCGCCAGCACTTGGCAGTAACCTGACTGACAATGTCACGATTACCGTAGATATTATTCCTTCAGGTTGGAGTTCAGCTGATGGGAAAAGTGAAAAAGCTAAAAGTGCACCTTCAAGAGACCCAGAAAAACTTCAGAAAATCAAAGAAAG
Seq A exon
GTAAATTCGAGTATTCAACACACACTGTAAGATAGATCAGATTAGAGATTTAAAATAGCTCTCATCTAAAGTTTCTTACAAATGGTGATGTAACCATGAGGTATGTTCTGGGGCATAAATTTTATCAAGAAATGATGTAACTTGTCTTAATTTATCTTGATATATACAAATGCAGATTAATTTCTTTTTCCATGGATAGAGCTGCTAAATGGAATTAATTAGGAAGAGGAACCAAATGGTAGCAAATTACCAATCTGTCTTAGCCTTTAATATATTAATTGGTTTACCACTTTTTGTATTTTTCAATTTTCCTTTTTAAAGATATATTAAATATAAGCTATTTTCTTGATTTTAAACTTTCCACATTTTTATTTCAAATAACATTTACACTCCCCTAGTAATATTAGCTTTAATACTTGTTCATTATAGCAGTTTCCTCTGACTGTAATCTATCTGGAGCATATAGCTTAGAATTCTTACTTCACAGATATCTTTATTGATCTTGACTGGTTTACAGTGAGGTGCCACTCTGTCTAGTTAGGTAGGTTTGGTCTTGTTTGGTTGGTTGGTTTTGCTTTCTTTTGTTTTTGAGACAGGGACTCATTATATACCCCTGGTTGGCCTGGACCCAGTAGAGATTTACCTGCTTCTGTCTCTCCCATGTGAATTAAAGACATATACTACTACCATGCTACATCCTAGATAATACAGTTTTAAAAGAGCATTTATCTTGACAGAGTTTGTAGTATGTATTTTTGTGTGTTTATTGTATTTGGCCTCATAGATGAGAATTTTAAGACTTGACTGGTAAGTAAACAGGAAAATTGGATCTACTTAGTAAAATATAATTGAAACATAAGGGGAAAATGTTACATACAGAACAAAACGATTAGCTTTTTAGGAGTTTGTGCTTAATGTCATGATTCTGATTAAGTAAAGGCAGAAAGTTACCTTGTAGCCTGTGTGTCTTTCTGTTGGTGTCTTGCTAATAACTTCACTCACACTGTCCAGGCTGTACTTCAGGAACAGTTTGTCACTAAGCACTGTCAGTTTACTGTGGGCCTCCTTCATGTGCTGTCAGTAAACTAACAAAATAGGAATTTTGACAGAAGCCTTTGCTTGTTAAAAGTGAATTTACATATAAATGGTACATGTTAGTCTGTATAAAAGAGGGCAATAGAAAAATGTGTGTTTTAAAGCCTTCCTTTTTAGATACCAGAACGATTCAGTAAGATTGTTGAGTAAATGATGGAGAATTTTTAAATCTTTTTAAAATTTTGATTCAATGTGAATAAAAAAAAAGTCAGTTTTGATAACATGTAAATGAGAAATACAATTCAATATGTTTGCAATTCATTGAAGTAGCCTTAAAATTCTTTCACAGTTGACAAAATGATGTGTGTTATCCTTTTACTATTGGATTTCCAGTAACCTAGAACACTTCAATAATTAAAATCTTAGTGATTTTGGAAAAGATGATCTTAAGATAGATTTCTAAAAAATGAAAGGTGACTCATTTAAAGCTGAGCAGCAATGCAGCTGGCCTTACTTATGGCGACATTGTACTCAGTGGCAAGAACTCTCAGGTCACGGTCTTTGTTGATTGCTGTACTCAGTAGAAATGTTAAGATTCAAATTCTGTATGATGAAATGGTTATCTAGGAATTAAGATAAGATAGTTCTGAATTATGTGCCTTCCCTTTCAG
Seq C2 exon
CCTCCTCTTAGAGGACTCTGATGAAGAAGAAGAAGGGGACTTATGTAGAATTTGCCAGATGGCAGCAGCGTCATCATCTAATTTATTGATAGAGCCATGCAAATGCACTGGGAGTCTGCAGTATGTCCATCAAGAGTGTATGAAGAAGTGGTTACAGGCCAAAATTAATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006241:ENSRNOT00000008464:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.809 A=NA C2=0.068
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF129062=RINGv=PU(76.8=72.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACACCAGATTTGCCACAG
R:
CTGCAGACTCCCAGTGCATTT
Band lengths:
351-2057
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]