GgaINT0050124 @ galGal3
Intron Retention
Gene
ENSGALG00000012584 | MARCH7
Description
NA
Coordinates
chr7:38338543-38340078:+
Coord C1 exon
chr7:38338543-38339656
Coord A exon
chr7:38339657-38339908
Coord C2 exon
chr7:38339909-38340078
Length
252 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
3' ss Seq
TGATATTCCTGCCTATTCAGCTT
3' ss Score
6.4
Exon sequences
Seq C1 exon
ATTTTCAGGATAGGCCTGCCTCTACATATGCGGAAGGAGCAAGACCAAAAGAGAACTCATTAAGTGCTTTGAGGCTAAATGCATCCATGAACCACCAGTTGCCTTCTGGTCATCAGACATCTTTTTTCAACAGAGACTCTAACATAAGATCTTCAAGGACCAGCTATTCTTCAAGACAAAGGAGAAATGAAATAGAATCTCCCCAGAGGAACATACACCCGGCATTTTCTCATTCTACCACTAGAGGCGAAACTTCTTCAAGTAGTTCTGAAAGGGTTTTCTCTTCTCAGAGGTCACTGAATGATGCTGCAGCTGACACTGAAGGAAGACGCACAACCAGACAGTTGCTGTCTCGTTTAGCATCTAGTATGTCATCTACATTTTTCTCTCGAAGATCTAGCCAAGACTCATTGCAGACAAGGTCATTAGGCTCTGAAGAGTCATCTCTTGTCCCAAGAGTTCAAGCTTCTACTCTGTCTAGCACTAATGGAGCTGCAACTCCTGAAGCTCCAGGACTTCATACATCTGAAGCTTCTCAGGGATTTAGTTTTCTGAGACGAAGATGGGGTTTGTCAGGAGTTTCACAGAGTCTTAACACTGATTCAGATGGGGAAAGCTACAGACCAGACTCTGAAAGTAGGAGCACAGGGTCCTGGTTGTCATCATCTTTGAGGAACAGATGTACACCACTCTTCTCCAGAAGACGGAGAGAAGGAAGAGATGAGTCTGCAAGAATCTCTACCTCTGATGCAGCTGCTAGATCACAACATGTTTTGAGAAGAAGAGAGTCAGGTGAGGAGACCTCTCTTGAAGCATCAGATGGCCCCCCTAGGGCTTCTGTTAGCAGACCACCAACACCTGCAGTATCTGGTATTCCTACAGCTACTGCCTCCCCACCAGATTCAGCCCACAATAGGCGAAGTTCTGGAATTCTGCCTAGTTCTCTCTTTCGCTTTTCAGTGCCTCCAACATTAGGAAGCAGTCTATCTGACAATCTTATGATAACTGTAGATATTATTCCTTCTGGCTGGAGTCAGTCTGATGGACAAGAAAGTGACAAGTCCAAAATACCACCTTCAAGAGATCCAGAAAGACTGCAGAAAATTAAAGAGAG
Seq A exon
GTAAATCTGTATGTTGTGAGATAATTTAATGTGCTTGACTTAGCATGAAAGGGTTTTCTGTAACTTCAATGTTAAAACCTTGATCAGAGAAGAATGTAACTCAGAACTGTTACCTACGGGCTCACTTTCTGTCCTTGGAGAAACTTGTTTTTAATCCTCACAGATTTGAGAACAATTTGAGAGCAGAAGTAGGTGTTATAAAATATTATGTGAAATGTGCCACAGTATTTGTTGATATTCCTGCCTATTCAG
Seq C2 exon
CTTGCTTTTAGAAGATTCTGAGGATGAAGAGGGTGACCTATGCAGAATCTGTCAGATGTCCTCTGCAAGTACTGACAACAATTTAATAGAGCCGTGCAAATGCACTGGAAGTCTGCAGTATGTTCACCAGGAGTGCATGAAAAAATGGCTGCAGTCCAAGATTAATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012584:ENSGALT00000020547:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.820 A=NA C2=0.069
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF129062=RINGv=PU(76.8=74.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCACCAACACCTGCAGTA
R:
AGGTCACCCTCTTCATCCTCA
Band lengths:
308-560
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]