MmuINT0095815 @ mm10
Intron Retention
Gene
ENSMUSG00000026977 | March7
Description
membrane-associated ring finger (C3HC4) 7 [Source:MGI Symbol;Acc:MGI:1931053]
Coordinates
chr2:60233899-60236926:+
Coord C1 exon
chr2:60233899-60234997
Coord A exon
chr2:60234998-60236753
Coord C2 exon
chr2:60236754-60236926
Length
1756 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TTATGTGCCTTCTCTTTCAGCCT
3' ss Score
10.25
Exon sequences
Seq C1 exon
ATGTTCAAGAAAGAGTTCCTTCTTCATATTCACAGGGAGCAAGACCAAAAGAGAATGCAGTGAGCACTTTACAGTTGAATTCATCATCCACCAATCACCAATTGCCTTCTGACCATCAGACAGTACCAAGTTCTAGGGACTCCAGTAGAAGTTCTTTCAGATCACATTTTTCTCCAAGACAATCAGAATCTTTTCGCAACAGTTCACATCCTGCATTTTCATATTTTTCAAGTAGAAATGAAACTCCAACTATAAGCAATTCAGAAAGGGGTTCATCTCAGAGACCATATCGAGAATCTTCTGACAATGAAGGTAGGCGTACAACTAGGAGATTGCTGTCACGGATAGCTTCTAGCATGTCATCTACTTTTTTCTCACGAAGATCTAGTCAAGATTCCTTGAATACAAGATCTTTGAGTTCTGAAAATTATATTTCTCCGAGAACCCTGACTTCACAGTCTCGGAATAATGGAACCTCCTCGTCCTCTGACGTCAGTGAGGGCAGGGCAGCTGAAGCATCTCAGGGATTTAGATTTCTTAGGCGAAGATGGGGGTTGTCGTCGCTCAGCCAAAATCATAGCTCTGAACCAGAGGCAGAAAATTTTAACCAAGAATCAGAAGGTAGAAATTCAGGACCATGGTTGTCTTCTTCACTTAGAAATAGATGCACACCTTTGTTCTCGAGAAGGAGGCGAGAGGGAAGGGATGAGTCTTCAAGAATGTCTACGTCAGATGTACCACCTAGATCTCATATTTTCAGAAGAGATTCAAATGAAGTAGTTCATCTTGAAGCACAGGGTGACTCCCTTGGGGCTGCTGCCAACCGACCACAAGCATCTGGAGCGTCAAGCAGTGCTGCTGCAGGTGGCTCCACCCCAGAGTTGCCTCAGGGTGGAAGAAATCCAGGACTAACAGGGATTCTTCCTGGCTCCTTGTTCCGGTTTGCAGTCCCACCAGCACTCGGCAGTAATCTGGCTGACAATGTCATGATTACTGTAGATATTATTCCTTCTGGTTGGAATTCAACTGATGGGAAAAATGATAAAGCTAAAAGTGCACCTTCAAGAGACCCAGAAAAACTTCAGAAAATCAAAGAAAG
Seq A exon
GTAAATTTGAATATTAACAAACATTGTAAGCTAGATCAGATTAAAGATTTAAAATAGCTCTTGTTATCTAAATTTTCTTACAGACAAATGGTGATATAACCGTAAGGTAAGTTTTGGGGCATGAGTTTTACCAAGAAATGATGTGTGGGGCAGTGGTGGCACAAGCCTTTAATCCCAGCACTTGGGAGGCAGAAGCAGGCTGATTACTGAGTTCGAGGCCAGCCAGGGCTACACAGAGAAACCCTTGTCTCGGAAAAAAAAAAACAAAAAAACAAAAAAAAAAACCCCAAAAACCAAAAAGGTGGGGGGGGGGGGGAAGGAAGGATGAATCTGACATGTCTTAATTTATCTTGATACATACAAATGCAGATCAGTTTCTTTTTCCATAAATAGAGTTACTGCTAAATGGAATTGAGTTAGGAACAAGAACCAAATGGTAGCAAATTACCAATCTATATTAGCCTTCAATAAATTAATTGGCTTACCACTTATTTTTTTCTCAATTTTCCCTTTTAAAGATACACTTTAATATGGGTTATTTTCCTGATTTTAAACTTCCACAGTTTTATTTTAAAGAAACATTTACTCTCCCCTAGTACTCTTTAGCGTCACTACTTGTTCATGATAGCAGTTTCCGCTGATTGTAAGCGATCTGAAGATTGTAGCTTAGGTTTCTTACCTTCAAAGATGGCTTTATTGATCTTGACTGTTTACAGTGATGTACCGCTCTGCCTGGTTAGGTGGGTTTTGGTTTTATTTGGTTGGTTTTTGCTTTTTTTCTTTTTGAGATAGTCTCATTATTATGTAGCCCTAATTGGCCTGGAGCCAATAGAGATCTACCTGCTTCTGTCTCCCACATGTATTAAAGACACATACTACCACACCGCGTCCTAGATAATATAGTTTTAAAAGATCATTTATCTTGACAGAGTTTATAGTATGTGTTTTTATGTGTTTATTATATTTTAACCTCCTATATAAGGATTTTAAGACTACACTGATTGATAAACACAGAAAAATTGGATCTACTTAGTAAAATAGAGTTGAAACATGAAGGGAGACATGTTAAATACAAAACAGAATGTTTAGCTTTTCAGAGTCGTTTGTGCTCAATGTCGTGTTTCTGATTAAGCTAAGGCAGAAAGTCACCTTACATAAGTCCGTGTGTCCCTTTCTGTAAATGTCTTGCTAACTTGACTCACACTGTCCAGGCTGTATTCGTTCAATACTGTCCATTTATTGTATGCCTCTTTGATGTGCCATCAGTTAACTAACAAAATATGACTTTTAACAGAAAACTTTGCTTGTTAAAAGAGAATTCACATATAAATGGTACATGTTAGTCTGTTTATGAGGATAATAGAAAATGTGGGTTTTAACGATTAAGATGGTTCTGCAGTAACCTTGCAATTGTATTGCAGTTGACAAATGACATGTGTGTTACCCTTTACTGTTGGGTTTCCAGTAACCTAGAACACTTGAATAGTTAAAAATCTCAGTGATGTTGAAAAAGGTGGACTTAAGATACATTTCTGAAAACAAAAGGTGAGCCGTTTGAAGATGACCAGTGGTGCGGTGCAGCAGGCCTTAGTCGTGTCCACATTGTGTTCACAGTGGCAGGAACTCTCAGGTCACCCTCAGTGCTGCTTGCCGTACTCCTCAGTAGAAGTAGAAATGAAAGATTGAGATTCTGGATAATGAAATGGCTATTTAGGAGGAATTAAGATAGTTTTGAATTATGTGCCTTCTCTTTCAG
Seq C2 exon
CCTCCTTTTAGAGGACTCTGATGATGAAGAAGAAGGGGACTTATGTAGAATTTGTCAGATGGCAGCAGCGTCATCATCTAATTTATTGATAGAGCCGTGCAAATGCACAGGGAGCCTGCAGTACGTCCATCAAGAGTGTATGAAAAAGTGGTTACAAGCCAAAATTAATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026977:ENSMUST00000102748:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.816 A=NA C2=0.079
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF129062=RINGv=PU(76.8=72.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGCATCTGGAGCGTCAAG
R:
TTAGATGATGACGCTGCTGCC
Band lengths:
351-2107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types