BtaINT0090409 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018313 | MBNL2
Description
Bos taurus muscleblind-like 2 (Drosophila) (MBNL2), mRNA. [Source:RefSeq mRNA;Acc:NM_001099710]
Coordinates
chr12:78400221-78403332:+
Coord C1 exon
chr12:78400221-78400421
Coord A exon
chr12:78400422-78403068
Coord C2 exon
chr12:78403069-78403332
Length
2647 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTT
5' ss Score
7.82
3' ss Seq
CCCCCCCCCCCGTGTCCTAGGTC
3' ss Score
10.44
Exon sequences
Seq C1 exon
CCCACTTTTCCTGTAGGTCCCGCAATAGGGACAAATACGGCGATTAGCTTTGCTCCTTACTTAGCACCTGTAACCCCTGGAGTTGGGTTAGTCCCAACGGAAATTCTACCCACCACACCTGTTATTGTTCCCGGAAGTCCACCTGTCACTGTCCCGGGCTCAACTGCAACTCAGAAACTTCTCAGGACGGACAAACTGGAG
Seq A exon
GTACTTCAATTATGTTTGTGTTTTGAGATGCCTTGGGGGTAGCAGTGTACTTCTATGGAAGTGAATGCTTGTGAGATACCAATTCAGTCTTGCAAGACAGCCACGCACACAGATTCACCTAAAAGTCGCGTATTTCATAATTCTCCTGTTTGAATTGAAGGCCAAGTATAAAGGAAATTAATCTGTGGGAAAAGAATAAGTTCAATACAAATAAAAATCGATCATGTGGAATGTGTATTCAGAGGCAAAATATGCAACAACCAATCACTATGTGGGTCATGGAAGTGGCTCCCAAGGGTTCCAGCTGTGTCAGGCATGAACCTTTGCTGGATCTTGGAAAGGTCTGTGAATGAAGTTTAGGAAGCCAGCAGCCAGGATGAAGGGGACACTCAGGTCAGAGGTGGGAGGAAGTAGGACAATGACTACAGACCAACTGGTATGATCATGTTTCAGTACTTTAAGAGCTAGTATGGCTGCTCCAGCACGCTCCAGCCCCGGTTGTATGTGGGTAAACACGGGGAACTAGAGCCTGGGAGAGTCTAATTATTGATTTGAGATATTTTCTTTAACTGACATTCAAGTCTTCTAGAAAAGTCAAGAAAACAAATTCATATATTTGTAAAATGTAATTCTTAAATCAGGAGTCAAACCAGTCACCTGGGTTTAACTTTACTGGGTTTAATTTCTCTTTAATCAGGGCATCCATTTATCTTAACTACTCCATCCTCTGATATTTAATAGAGCATTTTATATGGAGTATAAAGAATCTGATAGATTTTTCAAAGGGCTCCTTAAATTTGATCACCAATTATAGTTAGGTGATACATATGTAAGATTAGGATATATACTGTGCTTTATCTTGGGATCATTCGAGAATGATTTTTTCAGTGTGCATTTGTTTAAATATTTACTCTATAAATCTTGAAAGTGATAAAATGTTGCCTAATACCAGCTTCCTTCTGAAGTATATGGATCCCCAAATGAAAAGACTATAAACTCCCATCGCTACGGTTTTGATCCAGCCTACCCCTGTGATTATTGAACAGACCTTTCACGGGACTGGAAAAGTGTTTGGGGCGCCACCTGGTGGACCTGTGAAGCTTTCGTGTTCAGTACGTGACTGTGTGGTTTAGAAAACAAATTAAATCAGTCGAGTTGGGAACAAGTTGTCCTTCCCAACAGGATTGGCAGACAAAGACATATATAAAAGTGATTCACGAGGACTTTAGCAAAGCAGCTTGCAATTTATTTCAAAGCAGGAATGAAGTCGGTTGCACACAGAGCCCCTAGGTAAATGCTCCACTTACAAGGGGAGGCTTACTCACAGTCTGTGGGAACAGCTTAGTAATTTTTCTTTTGTACATTTTATGAGCTAAAGATGGAATGTTGGATAATATCCAAAGTAGAAGGAAACAATTAATAATTTTGTGATTTATCTGCTTGGCCTTCAAACTTGCCTGGCCACTGATCAGTGAAACTGTATTTCCCAAGTATCTTTGACTCTCACAAGGCTTCCAGTGTCATGTCAGTGACCCTTCCTATAAGTCACTAGTGATCAAGATGTGAACCACCACTTAAGCACATCAACACTGGATGTAGAGCCTGAGAAGAAATTACCATTTCACTAATAATTTTTCTCTGATACAGATATTTATAACTTGTTTCTTATTTGTGTTATTTCATGTTATTGATATTTAGGGCAAGATTAAGAATACTCTTTAAATTCCAAGGAAAATTTTCTTTATACCGTTAACTCTTGATCCATGGGAATTCTCAGAGGATGGAGCATTTTAGTTACTAGAGATTTCAGGATAATTAAGGACTGAAGAATAAGAAAAAGAAACATCAACACTTCAAAATCTATCTTACTTCCTTCTCCCAGGCCCTGCTTTATCTCTTCCCATATTTCTCTCCTTTTTATCTTTTCTTTATTGTCAAAAATAATAATATTGTGACTGAAATGAAAGTTTTGGTGTCTTGGGTATCATAGTTCTTCTAATCCATGATTAGAAGCCCACCTTATCTTGTACAGCAGGAGAGATATAGGGGAAAACGGGAGTATTCACATTCACCCTGCCCCCCACTTCCCGTCCTCAGGGAGGAGAAACAAGTTTGTCACTTCTCCTTAATTCTTTTTGGAATTGTGCAGCTATGATGTTGTGGCTGGATCCTTGGTGAAATAATCCCTCCATGCAAAAAACCCCGCAACTTCCCAGAGTTGTCATGGTAGGAGATGTAGTTATATACAGAAGACCAGATTTTATACATATATATGTGTGTGTATATAATCTCTGAATTAGTATATATATATTTTATTTCCTTCCTTCCCTTCTCTATAAAAGTAAATAAATATAAATAAAACCGAAGAACAATGGGAGCCTTGTTGATTTTTCTGTTATCTTAGCTAAAGTGTAGATTTTTACTTCCTTGCTCAATACAGATTCTCACCTCAGCAAACAGGGCGAAGCAAAATTCAAGTGATCATAGTTTGCCCGGGATTCCAGTGACTTGGGTTCTGGATAATCGAATGTTGATTGTAAATGGCACAAAAGCCAGCATTCAAAGAACGGGAAAGCATCTTCTTCTTCTTTTTTTTTTTTTTAAACTGCATCACATGCTCTTCTCCCCCCCCCCCCCCGTGTCCTAG
Seq C2 exon
GTCTGCAGGGAGTTCCAGCGAGGAAACTGTGCCCGGGGAGAGACCGACTGCCGCTTTGCACACCCCGCCGACAGCACCATGGTCGACACAAACGACAACAGCGTAACCGTTTGTATGGATTACATAAAGGGGCGTTGCATGAGGGAGAAATGCAAATATTTTCACCCTCCTGCACACTTGCAGGCCAAAATCAAAGCTGCGCAGCACCAAGCCAACCAGGCCGCGGTGGCCGCCCAGGCAGCCGCGGCCGCGGCCACAGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018313:ENSBTAT00000030532:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.496 A=NA C2=0.199
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PU(11.1=4.5)
A:
NA
C2:
PF0064219=zf-CCCH=PD(81.5=25.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development