Special

GgaINT0123094 @ galGal4

Intron Retention

Gene
Description
muscleblind-like 2 isoform 5 [Source:RefSeq peptide;Acc:NP_001156846]
Coordinates
chr1:144602400-144603931:-
Coord C1 exon
chr1:144603731-144603931
Coord A exon
chr1:144602664-144603730
Coord C2 exon
chr1:144602400-144602663
Length
1067 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
CAGTGTTGTTTTGCACGTAGGTG
3' ss Score
6.42
Exon sequences
Seq C1 exon
CCCACATTTCCAGTGGGTCCCACAATAGGAACGAACACGGCTATTAGCTTTGCTCCGTACCTAACGCCAGTAACACCAGGAGTTGGCTTAGTCCCGACTGAGATCCTGCCCACGCCACCCGTCATTGTTCCTGGAAGCCCACCGGTTTCAGTCCCTGGTTCTACTGCTACTCAGAAACTCCTCAGGACTGATAAACTGGAG
Seq A exon
GTACTGTAGACACAACCATGGCTAGAAATGCAGTTCTCTGACACGCTGTAGGAGGAAACTCTGGAGGAAAAACTCCACTATTTTAGAAACTGTACTTAAAATATAGTTGCTAAAAGTGCAGATATCATAACTAGCCACAGTTCCTACGCTTGCAGCCAATAGCAATTAAACACTTATTTGGAGGTAGTTTACTCAAGTTTAATACGTAGAAGTCAGCATGAAGTTTCATCTTTCTTTGTCTCTTCAAATGTCCCTCAGGTTTACGTGCCTGTAAAGGAATGCTTTGGTGAAATATCTAACAAGCATATTCTTATTGCAGTGTTAATTCTCTCCTGATTTTAATTAATCAGTATTAGGGTAATTTTACAGGCCTTCAGCCTTGAGCTTCCACTGTAGGAGTTGCATGTCACAAACCTCAGAGCAGACTGGGCAGGAAAGCCCCCAGTTTCGTGTAGGGCCTCCATGGAGTTGGTGGATCCCCACATGGCCAAGCTTGGTGGAATCTATGGTCCAAGCACACAGGAGGGCCAAATGCTGCTTACAGAGATGAACACCCTTTCCCAAAAGCCCAATATCTAGAGCACATTGCTCCTCAATAAATTCAACCTGGTTCTGTCCATTTTTAAAAATTGTGTTTTGGAGGCTCTCCGTTTTGCTTTAAGACTCTATACAGTTCTTTGTATCTTCCTTGAGTGTCAACAAGAGGAGCACCTTCCCTACCAGTGGAGTTGAAAGAACTTAGAATACAGTTAAAAGGGACTGAGCATTGTGAGTCTCAGCTAGTTTTGCAGGGGCAGTTACTTCAGTAAGAATCCTTCCCAGGTGTTGTCTAGATACGAAAAGGGAAGGACGTTTTGGATTGTTTCTGTTTCATGTCCATTTAGCCACCATACCACAGAGCTACCCAAGGAGTGGTAAAATAGATGCATTTTCCCTCTCCCAGAAGAAGATAGCGAGTTCATTAAGTTGGATTCGCTGAGCTAACTGGGGGAGGGGGAAGGTCCATCTTGGGAGGCGTGGGCTCTCCCTGCCGTTTCGGGTTGCAACCAGTGTTGTTTTGCACGTAG
Seq C2 exon
GTGTGCAGGGAGTTCCAGAGGGGAAACTGTGCGCGTGGAGAGACTGATTGCCGCTTTGCACATCCGGCAGACAGCACAATGATTGACACAAACGACAACACCGTAACCGTGTGTATGGATTACATAAAAGGTCGTTGCATGAGGGAGAAATGCAAGTATTTTCACCCTCCTGCACATTTGCAGGCCAAAATCAAAGCGGCGCAACATCAAGCTAACCAGGCTGCAGTGGCAGCCCAGGCAGCTGCGGCAGCTGCGACTGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016890:ENSGALT00000042993:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (disopred):
  C1=NA A=NA C2=NA
Domain overlap (PFAM):

C1:
PF0273412=Dak2=PU(9.0=11.9),PF0064219=zf-CCCH=PU(11.1=4.5)
A:
NA
C2:
PF0064219=zf-CCCH=PD(81.5=25.0)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
LOW PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCAGTAACACCAGGAGTTG
R:
GATGTTGCGCCGCTTTGATTT
Band lengths:
345-1412
Annotated function
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]