RnoINT0090150 @ rn6
Intron Retention
Gene
ENSRNOG00000010737 | Mbnl2
Description
muscleblind-like splicing regulator 2 [Source:RGD Symbol;Acc:1591755]
Coordinates
chr15:105753396-105756928:+
Coord C1 exon
chr15:105753396-105753596
Coord A exon
chr15:105753597-105756784
Coord C2 exon
chr15:105756785-105756928
Length
3188 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTT
5' ss Score
7.63
3' ss Seq
GCTCTTTCCTGTTGTCTCAGGTA
3' ss Score
8.38
Exon sequences
Seq C1 exon
CCCACTTTTCCTGTAGGTCCCACCATAGGGACAAATGCGGCCATTAGCTTTGCTCCTTACTTAGCGCCTGTCACCCCTGGAGTGGGGTTAGTCCCAACAGAGGTTCTACCCACCACACCTGTCATTGTTCCGGGAAGTCCGCCGGTCACTGTCCCGGGCTCAACTGCAACTCAGAAACTTCTCAGGACCGATAAACTGGAG
Seq A exon
GTATTTCAATTATGTTTGTGTTTGGAGGTGCATTAGACGATAGAAGTGTGTGTCTATGAGAGTGCATGAATGCTCGTGAAATAACTTCATCCTGCAGAAAAGCCCATGTTCGAGCACACGCTGCTGCAACCCCATGTATTCGTAATTCTGTGCTGTAAAATGAATGCCCCATATAAAGGAAATTAGCCCAGAGGCAAAGAACAATATAAGCAAAAGTCAGCTGCTTGGGTTTTATGTATAAGGATAAAATATTAAGCTAGGCATGGTGGCTTGTGTCTCTAGCCACAAGACCAGGGAGTTGAAGGCCAGAGCAGACTACAGAGCAGTGCATGGTCTCTGTGGGCTACAGAGTGAGACCCTGATAGAATATGGACGTCACCAGGATGTAAGCCACAGAGCTGGCTCTTGGTCTTAAGTGCTGTGCACAGCAGCAATGGCGTTTAGTAGACTCTGGAAGTCCGGGAAATGGTCAGAACCCCAACAGGTCAGGAAGATGGGGCGCTCAAAGTGAATAGGATTTGAGCCCCTGGCAGTTCTATGAATGAGGTGTGGATGCTGTCCTGTGTCTTAAAGGCTTTATTGGTAAGTAGGAGTCAATGTGGTTATTGATATGTTGCCTTTAAAGTAAATCCGGATGTCCTCTGATATTCAAAAGGATTCAGTGCGTGTATTTTTACACATCCACTTTTACATTTGGATCAGGCAAATCCTCCCAGACGTGGTTGAATAAATTTTTCTTTAATCAGGGCCAAGGGTTTTCCTTTTGGTCTTGCTTCACTATCCCGGTGCCCGATAGTGGGGCATTCCATATGGTTATGGAAGATTCTGATAGATTTCTGAAAGGCTTCCTTCCATTCCGTTATTGATTAGAATTGTTAGGTAATTTCTGTAAGCTTAGAATACAGACCTGTTAAGGGATCTTCTTCTAGTGTGCATTCATTTAAAAACTAACCAAGTGTATCTTGGGGGCAAGAAATGTTTACTGCCTAGCCCCTGGCAAATGCTTTAGAATTTAGGATGCCAAACTGCAAATATCTTCAGAACTACATCTTCTCACTTAGTTTACCCAAAGTATATGGATCTGTCAATGGAGAGAACTTAAACTGGTCACTAATATTTGGGAGACTTTAGGCTAGCCTAGGGCTACTGAGATCTGTCCTGAGAGTTTTGGCCTCCTCCTGCTGGGGCTGAGGGAGCTTAGGTGCTCAGGATATGACAGCAAAAACCAAATACAATGAGAAAGGTTGGGAACTAAAGGTCTTTTCTACAGGATTGGTAGACAAGGTACCTGTGACTTGAAGATGACCTTAACAGATCAGTCTGTCCAGTACATACCAGGAAGGACATCCGCTGCACACAGAACATCTGTGAACTCCAGCTATACCTGACAGGGTCAGATAGTCAGGACTCAGAGCTTTGATAACCCTGGATGTGGTGATCCAGCTCCTGGGAAGAAGAGGCCTGTGAATTGGCAGTTCAAGGCCAGCCTCTGCTACGTGGTGACTCCAGAGCTAACCTTGGCTCTCTGAGATTCTGTTGAAAGACAGAATGAGCAAAACCAGAATCTAGGTGGCTATCTGAGTAGATTTTAGTTTAGAAATGTTTGTGACTGGTGGTGAGACATTGGCCAGTACTCAGACAGAAAGAAATTGGGGACGACTCTGAGATTCAACCTATACTCACCTGTCAACCTAGCTTGGCCACAGGTCAGTGAAATACTTTCTTGGAAATGACTGGCTTTCACAGACTTGAGCTTCCTATCTCTGTCCCTTCAGCAACATCGCTGGTGACCAGGAAAAAAACCAATGCTTACACTTACTGGCTGTGGGACTGGAGCCCAGGAGAAGCAATTTCACAATTCTTTGAGCTCCTTCCTGCTGATATTTATAGCAGGGATGAATTACATAAGTAATATAAGTTGGCTTTTCTTACTTCATAAGGTCTAGAATGAAGAGTACTCTTGATGTCTACGGAATGCATCTGTGTAGTAAAATCCTGGCTCACTATAGGTTTCAGAGGATAGAGAAGTTCAGTTGTTTGACCTCAACGTTTTTTAACTTCTCTGTTCTTTGTTTTCTTTTTTCTCTTGCTGCATTTCTCTCCATTCCTGTCTTTTTTACCTTTCTTCTTCTTCTTTGCGAGCGATCAAAAATACTACAGTGAGTTTAAAAGGAAAGTTCTGATGTCACAAGCGCTTAGTGATGTCCTGAGATGGTGGTTTTACCTGTGATACCTTTGTAGGGGGTGGGCGCAGGAATCTCCACAGTCAGGAGCTTTGCCCCCATCCTCAGGGAGGTGAACAGATGGGCATTTCCTCAGAACTGTCTATACACTGTGGTAGCTTGGTGTACAGGCTAACCATCCTTCTGTACCAGGAACATAGAGCTCCCCAGAGGTACTGTCTGAGGAGGGGGGAGAGCGCTTGTAAGATGTAGGTAGATAGAGGGACTAGAGAGAACCTGAAGGGAAGAAAGGGGGAAGAAGGGGAGGGGAGAGAATGAAAAGTAAATAAAAAGAAAGTGTGTGTGAATTACATCACTGTGGCCACATAAGCATAGTAAAAAGGAGGGTAGGATGACAGTAAGTAGATGATTGCTTCATTGATTGATTGATAGACAGACATGCGCACGCGCTCGCGCGCACACACACACACACACACACACACACACAGATGTGTGTGCTACTTGATAGGTACATATATGCACCTGTTGTAAAACTGTTGCATTCAAAAGCGTAAGTAGTAATGGAAACAAGTATGCTATACCTTGAAGAAACAGTGGTAGCTTTGTTCAGTTATTTTTTTCTTTGCCCTTTTAGGAAAAGAACAAGTTTCAGAATAATTTCTCCATTTCAATATTTACCCTAGAAAGGGGGGGGGGACAAAACCCAAATTAATTCTTTAGCAATTCCAGTAACTTGGGTTCTAGATCATAACAGTTTTACCTTTGGAACCTAAAGACACCATGAAGGGAAGTCTCCTTATCCTCCTCCTCCTTCTGATCCTTCTCCTCTTCCTCCTTCTCCTCTTCCCCCTCCTCCTCCTGCCCCCCAGTCCTCCTGATCCTCCTCTCCCTCCTCCTCCTTCTCTCCCCCTCCTGCCTCTCCTGGTCCTCTGCCCACCTCCCCCTCGTTGGTGCGGTGGCCACAGGCTTTCTTCTGCAGCTCTCTGCTCTTTCCTGTTGTCTCAG
Seq C2 exon
GTATGCAGGGAGTTCCAGCGAGGAAACTGTGCCCGGGGAGAGACAGACTGCCGCTTTGCACACCCGGCAGACAGCACCATGATCGACACAAACGACAACACCGTAACCGTTTGTATGGATTACATAAAGGGGCGTTGCATGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010737:ENSRNOT00000014300:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PU(11.1=4.5)
A:
NA
C2:
PF0064219=zf-CCCH=PD(81.5=45.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]