MmuINT0096305 @ mm9
Intron Retention
Gene
ENSMUSG00000022139 | Mbnl2
Description
muscleblind-like 2 [Source:MGI Symbol;Acc:MGI:2145597]
Coordinates
chr14:120784613-120788385:+
Coord C1 exon
chr14:120784613-120784813
Coord A exon
chr14:120784814-120788121
Coord C2 exon
chr14:120788122-120788385
Length
3308 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTT
5' ss Score
7.63
3' ss Seq
GCTCTTTCCCGTTATCTCAGGTA
3' ss Score
7.36
Exon sequences
Seq C1 exon
CCCACTTTTCCTGTAGGTCCCACCATAGGGACAAATGCGGCTATTAGCTTTGCTCCTTACTTAGCGCCTGTCACCCCTGGAGTTGGGTTAGTCCCAACAGAGGTTCTACCCACTACACCGGTCATTGTTCCCGGAAGTCCACCGGTCACTGTCCCGGGCTCAACTGCAACTCAGAAACTTCTCAGGACTGATAAACTGGAG
Seq A exon
GTATTTCAATTATGTTCGTGTTTGGAGATGCGTTGATGATAGAAGTGTCTGACTGTGAGAATGGATGGATGCTTGTAAAATAATTTCATCTTGCAGAGAAAGGCCACATTCACGCACACACTGCTGCAATCTCATGTATTCACAATTCCATGCTATAAAATTGATGCCCTGTATAAAGGAGATTATCCTAGAGGCAAAGAACAACTTTGATATAAGCAAATGCCAGCTGCTTGGGTTCTATGTATAAGAATAAAACATTAAGCTAGACATGGTGGCCTGTGTTTGTAACAGCAGGGCCAAGGAGCTGGTGTGAGGAGCCTGCCACAAGTTCAAGGCCAGACCAGGTTTCAGAGAAGTTCACTGTGGGCTACAGAGTGAGAGCCTGTCTTGAAACACTAAATAAACATCCACCAGTAGAATATGGAAGTAATCAGGATGCAAGCCAGAGAGTTGGTCTTAAGTGCTGTGTACAGTAGAAATAGTTTTAGTGGACCCCAGAAAGTTCTGGAAATGGTCAGAAGCCCAACAGGCCAGGGAAATGGGAGCGCCCCCAACAGTTCTATGAATCAGCTGTGGATGCTGTTGCATGTCTTAATGGCTTTATTAGTAAGTAGGAGAAAGTGTAGCCTGAGTCAATTTGGTTACTGATCTGGTGTCTTTAAAGTAAATCCAAATGTTTTATAATATTTGAAAGGGTTAAATAGATATATTTTTACACATACACTTTTGCATTTGGATCAGGTAAATCCTCCCGGACTTTGTTGAATAAAATTTTTCTTTAGTCAGAGCCAAGGGTTCTCCTATTAGTCTTGCTTCACACTCCCTGTGACACACGATAGGGCGTTTCATGTGGTTATGTAAAGATTCTGGTGGATTTCTGAAAAGTTTCCTTTAATTCCACTATTGATTAGGATTGTTAGGTAATCTCTGTATATTTAGAATACAGACCTGTTAAGGACTATTCTCCCAGTGTGCATGAATTTTAAAACTAACCAAATATATCTTGGGGGCAAGAAATGTTTATTGCTTAGCCCCTGGCGAATGTTTTAGACTTCAGGATGTCAAACAACAAATATTTTCAAAACTACATTTTTTTTTTTTTGCTTAGTTTGTCCAGAGTACAGTGATGTTTAGCTGAAGAGAATAAACGAGTCACTACTGTTTGGGAAACTTTAGGCTAGCCTAGGGCTACTGAGATCTGTTCTGAGAAGGGAAATGTTTTAGCCTCTACCTGCTGGGGCTGAGGGAGCTTAGGTGCTCAGGGTATGACAGCAAAAACCAAATAACATGAGAAAGGTTGAGAACTAAAGGTCTTTTCTACAGGATTGGTAGACAAGACACCCGAGACTGGCAGATGACCTTACAGATCAGCCTTTGTCCTTTACATACCAGGACAGACACACAGAACATCTGTGAGCTCCAGCTAGACCTGTGAAGGTCAGATAGGCAGGACTCAGAGCTTCAATAACCCTGGATGTGGTATTCCAGCACGTGGGAGGAAGAGGCCTGGAGATTGGCAGTTCGAGGCCAGCCTCTGCTACATAGTTACTCCGAAGCTGGCCTCGGCTCCATGAGATTCTGTTGAAAAACAGAGTGAGCAAAGCCAGAATCTAGGTGAAGATCTGACTAGATTTTAGTTTAGAAATGTTTGTAACTCATGGTGAGACGTTGGCCAGTACCCAAACAGGAAGAAATTGGGAACGACTCTTGAGATTCAATCAATACTTACCTGTCAACCTGGCTTGGCCACAGGTCAGTGAAATCCTCAGAAATGACTGCCTTGTACAGACTTGAGCTTCTTATCTCTGTCCCTTCAGCAACATCACTGGTGACCAGGAAACAAACCAATGCTTACGTTTCCTGGCTATGGGACCGGAGCCCAGAAGAGGCTACTTCACAATTTTCTGGGCTCTTTCCTGCTGGTATTTATAGCAAGGATGAATTACATAAGTAATATGCAGAGGCTTTTCTTACTTCATACCATCTAGAATGAAGAGTACTCGATGTCCACAGAGTGCATCTGTATAGTGAACTCTTGGCTCTCACTATAGGGTTCAGAGGATAGAGAAGTTCAATTGTTTGAGACCAGCAGTTCTAACTTCTCTGTTCTGTTTGTTTTCATTTTTCTTCTTGCTCTATTTCTCTGTCTTTCTCTCCTTTCTTCTTCTTTGGGAGTGAGCAAAAAATACTACAGTGAGTTTAAAATGAAAGTCTTGATGCTGAAAGTGCTAGTTCCTGCGATTGGTGGTTTTACCTGTGATACCTTTGTAGGATGTGGGGTGGGGAGGGAGGAAACTTCACAGTCAGGAGCTTTGCTCTCATCCTCAGAGAGGTGAACAGATGGGTCATTTCCCCAGAACTGTCTATATACTGTGATAGCTTGGTATACAGGCTAACCATCCTTTTGTACCAGGAACAGATAGCACCCCAAAGATACTATCGTAGTAGGGGGTACCAACTGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGACAGAGAGAGAGAGACAGAGAGATAGAGAATGAGAGAGAGATGTAACCAGCACAGAAGCATTGTAAGACATAGATAGAGTGACTAGAGAGAACTTGAAGGGAAGAAAAGGGGAAGGAAGGGAGGGAAGAGAAGGAAAAATAAATAAAAAGAAAGTATATGTGAATTATATAACTCTGGTCACGTAAGCATAGTAAAAAGGAGGGTGGGATGATAGCAAATAGATGATTGATTGATTGATTGATTGACAGGCAGATAGAGAGACAGACACACAGACACACAGACACACAGACACACACACACACACATACAGATGTGCATGCTGTATAATAGGTAGATATATGCACAGGTTGTATAACTGTTTCCACACAGGCGTTCAAAGACGTAAGTAGGTAATGGAAACAAATACGCTAACTTTGCAAGAACAGTGGTGTCTTTGTTCAATTATTTTTCCTTTGCCGTTTTAGGTAAAGAACAGATTTCAGATTAATTTCTCAATTTTGATATCCACCCTAGAAAAGTGGGCAAAACAAAACCCAAATTAACTCTTTAGCAATTTGGGTAACTTGGGTTCTAGATCATTACAGTTTTACCCTCTGAACCTAAAGACACCATGAAGGGAAATCATCTCCTCCAACTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTACCTGCACCTGGTCCTCTCCCCGACCTACCCCTCCGTTGGCGCGGTGGCCACCAGGCTTTCTTCTGCAGCACTCTGCTCTTTCCCGTTATCTCAG
Seq C2 exon
GTATGCAGGGAGTTCCAGCGAGGAAACTGTGCCCGGGGAGAGACAGACTGCCGCTTTGCACACCCGGCAGACAGCACCATGATCGACACAAACGACAACACCGTAACCGTTTGTATGGATTACATAAAGGGGCGTTGCATGAGGGAGAAATGCAAATATTTTCACCCTCCTGCACACTTGCAGGCCAAAATCAAAGCTGCGCAGCACCAAGCCAACCAGGCCGCGGTGGCCGCCCAGGCAGCCGCGGCCGCGGCCACAGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022139-Mbnl2:NM_175341:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.843 A=NA C2=0.321
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PU(11.1=4.5)
A:
NA
C2:
PF0064219=zf-CCCH=PD(81.5=25.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: