BtaINT0090417 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014088 | MBNL3
Description
muscleblind-like splicing regulator 3 [Source:HGNC Symbol;Acc:HGNC:20564]
Coordinates
chrX:16114383-16117293:-
Coord C1 exon
chrX:16117258-16117293
Coord A exon
chrX:16114478-16117257
Coord C2 exon
chrX:16114383-16114477
Length
2780 bp
Sequences
Splice sites
5' ss Seq
TTGGTAGGT
5' ss Score
7.03
3' ss Seq
TCCATGATTCCTACTGAAAGTGC
3' ss Score
1.57
Exon sequences
Seq C1 exon
GGCCAATACTGTGCATGGCACCCGCTTCAAGTGTTG
Seq A exon
GTAGGTTTTGTACAAAAATTCTCAACTTTTTCTAATCTGAAAAGAAAAGTGTTTTTTATTGTGACTGTGAAAGAAACAAGCAACTGGATGATATAGCTGAAAATTTTCTGAGTATTTTGGTTTTAATATGGTGCTGTCTGTTACATGTTTTTGTGAAATCACAGCAGTCGTACACTCTCAAGTTCTAGTTCATTGCTGCTGTGGTTGAATACTGACCTTGCCATTTCTGTATTTTCACACTAAAAATTGTAGCTAAAATATCTTGAAACATTTCCTTATCTAGCCAGAATGGGCAGTTTTAAGAAACTAAGAAATTGTAAAATATTTAAAATACTTCAAATGTATAATTTGTAAAGTACAACAAAACCATTCCTCCCAAAAAAGGTTACCCAAAAGATCAAAATCATTCAATATTTAGATGTTGCAAAAAAGCAAAACTAGAGCCTTCTGTAGTGTTTTGTAATGCTGTCTATAGTGTTCTAGGATGAAGTGCCATCTGCACAGAAACAAGGCACCACAAAATCATTTCAAAATGACTCTCTGGGGGTATGTGATTTTTAATAAACAGTAACACACAGAACGTTTAATTAGCCACCCATCCAATATGGTAGCCATCTCAAAACCATTCTGTGCATGCGTGTGTGCTAAGTCACTTCAGTCATGTCCAACTCTGTGACCCCATAGACTGTAGCCCACCAGGCTCCTCTGTCCATGGGAATTCTCCAGGCAAAAAGACTGGAGTGGGTTGCCATGCCCTCTTGCAGGGGATCTTTCCCACCCAGGGATCGAATCCATGTCTCTTACCTCTACCTGCGTTGGCAGGCAGGTTCTTTACCACTAGCGCCACCTAGAAAGAAAACAAGGAAAGCGACTGGTTTGCCTCTCAGAACTCCGGGGGAGTTCACGGCTCCTGTCATTTCCACAGGCACCAGGAACAGACCAGGAGAAAATAGCCCTGTTCCATACAGGGAAGAATTACCCCACCTCACCCCACCATCTCATATCAATCCAGTTCCTTTTATCCTTTTCGAGAGTTTGCAACAGCTTGACCTCCATCTCATTGGTCAGCCAAAGTTGATGCAGAGTCAAGGGGTTTATCAAGATAAAGCAAAAACCTCAAGATGACAGCCACATAGTAGATGCACTCACTGACAGGTGAGGCCACTGTTATTAGTGATGCCCTGTCAGAATTAAAAACGTCTCCACTGATACTAACAGAAGCATTATATGCATATGATTAGGAGAACAGACTTTTGCAAGTTCATGAAATGTGTCTCCATCTACCCATTTTGTGCCTCTGCTCCCTTGTCCTTTTGCCTAAGAGCTTTGTGTAGGAATGCAAACTGCATGCTCCACTGGTACTGCTCCCTGTGCAATTGCTGTGCTCCTAAAGGGGAAACAAGAGTGTTTTTAGAACTCACATGTGCTACAATAAGGGATGGACTTCCCTGATGGCTCAGATGGTAAAGAATCTGCCTGCAGTGCAGGAGACCCGGGTTCAATCCCTGGATTGGGAAGATCCCCTGGAGGGGAGGGTATGACTACCCACTCCAGTATTCTTGCCTAGAGAATTTCCATGGACAGAGGAGTCTGGCAGGCTACAGTCCATGGGATCACAAACAGTCAGACGTAACTGAACGACTAACACTTTCACTTCACTTTTCACAATAAGGGGTGTTGATAGGTAGAGATAGATGGGCATGAGCAATTATTGCAGAGTTTCTGTTAATCACCACTTGGGGTACATTTATGGTTTCTATGATGTTGCATACGTTGATTTTCCTCTCCCTAGGCCATTCACTTTCTCTGTCAACTTTCAGAAAATCTGAATTCAATCGATGTAGATGCAAAGTATTACATATGCCCACTTGCCATTCACACATTAATTCCTTGGTTGGCTTTGCAAAATGAGTTAGAAAAAAAGAAGAGCATCCAAGAAACTTTGAAAATGACATAGAAACTAGAAAAGGCAAAGAGAAATCCACCTGAAAAAAGTTGTTACTGCTGCTAGTCACTGTCGCTGTACTATTTGCAGTGAAGGCAAGATTTCATTGGATATTTACTATGAAGTTCCCCTTGGAAACTTGGGCTATTTATGAACAATAAATAAGCAGCCTGAGTAGTTTCATAAGTAGCCCAAGTTTCCAAGGGCTTTGCCACAGATGTGCATAAAACCTGCACACATAGTCCACTGTATTCTTTGTATATGCTCTCTACCATATACCCACCAAACTATAATCTTTTTGTATGCAAATCAGGTAAGTATATTTATATGAAACTGTCCCTCTGCACCTACAAATCTAGTGACAGCACTCATGTCTGTCATGAGTTAATGAACCCAAATACCAATTTACAGTTCCATATTCCCATTGTGAATACACAACCAAGTTACTTTTCTGCTTGACTAGCTATTCATAGAGATAGCCTTGGTAAAAACAGATTTGTCCTAGGCACCCGTTGTAACCCCTTCTGAAAATTTGGCCCTTGAAGTCAACTACAGTGTGATTCTGTTCAAAAACTAACTATTGGTAAATGTTGAGAATGATTCCATTTTCCTTAATGGTAACTATAATTGGCTTTCCCCTTTTCTCTTTTTAAATTTTTCCCCCTTCCATGCTGTGTTGCTTTGCACTGACTGTGATTGCATGTTGCACCCTGGCGTATTCATCATGATGATGTCACATGGCTTGTTGCTGCGATACCTGCCACGCCCCATTCCATCGTTTATATCATGGTTGCTCCACCCTCTCGTGTGTTGCTTCCATGATTCCTACTGAAAG
Seq C2 exon
TGCCCATGATGCACAGTGCTGCACCCACCACTATGTCTGCAGCACCACCACCTGCTACCAGCATTCCCTTCGTTGCAACAGCTCCAGGCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014088:ENSBTAT00000018746:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]