GgaINT0072174 @ galGal3
Intron Retention
Gene
ENSGALG00000006066 | MBNL3
Description
NA
Coordinates
chr4:3497314-3501993:-
Coord C1 exon
chr4:3501843-3501993
Coord A exon
chr4:3497409-3501842
Coord C2 exon
chr4:3497314-3497408
Length
4434 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CCATGGTTCCCTTCCGAAAGTGC
3' ss Score
2.55
Exon sequences
Seq C1 exon
GCCCTGCCGCCTGGTGCACTTCAACCTTTACCAAAGAGGCCAGCACTTGAAAAAAACAATGGTGCCACCACAGTCTTTAACCCAAGCGTTTTCCACTACCAACAGGCTCTAGCCAACATGCAGTTGCAACAGCCTACGTTCATCCCCACAG
Seq A exon
GTAAGTGTCTCCTTGCTTTCTCCATCGTGGTTTTCTTTGTATGACCTAGACTCTGAGCTAATAAGCAGATCTGTAAGAGTCCTTAGCAAAAGAATATTAGTGTATAAAGTTTCGTGTTAAAAATCGATGGAATGTTAATGTATGTTGTTTGACTGTTTTTTCCTTCACCTAATGCAATCCAGAGCTTTTCACTTGTAAAGAGCCCTTCTTAGCCTTTCCTTTTTTTTTTTTTAAGCAGTCCAACTAAGAAAACTGTCTGCATGTTTCTTGAATTCATACTTGCTGTTTTTCCTTCTTATGGTTCAACTGGATAATCCCAAATTAATTCTTTGACTCTTGTGTAGCTATATTAAAGACTCATGTTAAAATATCTGGTGGGCCTGTATTTAGAGCTGCCTGCTCACTTCAAGCTGCAGGTTTCTTCTAACCTTCTATCTCAGTGACCTACATATTCCAGCAGCCGTTATGTTTGCAGAGGGAATGGCTCATCTTCAGTAAATACAAATTACGTAATTGCCTTTAAAGGGGCATATTTTTCCCTCTTGCTTGTCTTTTGACCAGTATGATAGCCTAAGATTTTTAAAAGCAATTTAACTCCCAGCTTTTATTGTACCTTTAAGGTCTCAGAGTAAAATTGAAAGATGCAGCTCAGTAATTCATATAGAAATCGAAACATTGACGTGGCAGATGTGACTGCTGCCTCGCCAATTAACCTCTGTTCGCTGCAGCCAAATGGAAAACAAAACCTGCTTAGAGTAGTAAGTACTGCAGGTGGCTGAATTGGGAACGTTTCAGAGTTGGTAGCCTCGTTTTAGCATCATTGTTTTCATTGCAGGGCATTATATGGAAACAAATGCCTGACATTTTTAACATTTAATGCTGTATTCTTTCGCCAACTGATATTTATAAAAATATACAGAGCCTTTCCGTGGGCTGTCTGCACAGTAAACATGCAGTAGACCTGGACCTTGGCAATTTCAGTCTTTGGAGTCAGGGGAAAAGCTTTAAGAGAGCCTAGTATTGAGGCTAAACTGTGTCTCAGCTGTGAACATGGTCCAGAGAGTCGAGACCTACATGTTGTATTCTCCTGGTCTTTGTGAGACCATTGGAGATGCTCAGAATTCAGCAGTTGCCAGGATGTTTTCCCAGGGAAGGAGTGTCTTATATGGAGAGATGAAGGGACCAAGTAGGAGTCCTGTGGTCTGCAAAGTGCTTTTGGAGGCTGAGCTGACATAAAGATACATATTTCTGATGCAAGCACTGTAAATTAGCTTTCACCCAGAACTCTCATGCTGCTGTTGTGCACTGTCTCTCGGCGATGGGATTACGCACAGGCTGATGCATAACAGATCAATTTGCTGACACTGGCTCTTGTCTGAGGACATTAATGCTTATCAGAGAAGTAAATTTCCAGTCAGAGAATGAATCGCCGATGAGTTTACACATCCACGTGTTCCCTTACTCATGCATCAGGCTGCAAATTTGATCTAAGCCATTGCAGTGCTCTTGGTAGCAGAGCAGAGAAGTGGCATGCAGCAGCTCACACCCTTTTGAGTGGTCGACTTACTTTTGTTAGTGTCTCCTATTCAGTCCTTGAAGTGTCAGTTATCCCTCTATGATAAACCGTGGTCTCTCAGCATCATGGTTTGCCATGGAGGTGGGGGGATCAGAGCGAACACTGAGAATGATGTCATCACTGCAGCTGTTTCAAGTCTAAAGAAACTGCCTCTTTCAGCTTTAAACTAGAGACTTTGAATCCCAAATCCCTGCTTCCAGGAGTAAATTGTTTTTAGAAAGTTGGTTTTAACATGAGTGTGATGTTCCTATAAGGCAATCTTGTCTGCTTCCGTGATTGGAAAGAAATCAATACACCTGATACTAAAAAAAAAACCACATCATTAAGCACCCTGATTTGTAGAGTAGATCACATCATTTAATACCAGGGTGGAAGAAGAAATAGATTTTCTACTACCCAAGAATGCAAGAATTAATTTGTTTTGCTACTGTCTCTTAAAACAGAGTTTAAACTATTTATGTATCAATATGCAGAATCTGTTTTGCATGTGCTTAAATACTGAATGCTGCAGAGAGAATACCTGCTTTTTAGTTAAAGTGATTTCTAACACTGGAGCTTCACTAATGAAATATCCCTTTTGTTCATCTTTCCACGCTTCAATGCATGGTGCGCAGGGTCAGTTCTGTGCATGACACCCACTGCAAGCGTTGGTAGGTTTTTCTACACAAACTTCTCAACTTTTCCTAATCTGAAAGAGACAGCAAGTCAGTATGCATCAGTGAGAACCTGGGTGGCTGAGTGGTGTGACTGTCTATCCGCTGTCTTCTTTGAGGCTTAAATGGTTGTACCCCTTTTAATTTCTGTGCAGTGCAGTGTTTTGTGTGACTAATACAAGAATCCAAGGCAATGCATTCCCACCCCTATTTAGTTCTGCTACAGAAAGAAAAAATTGTCAACCTAAATGTCTTTACAACCCATTTAAGTCGTCCAGCAAAAGGAATAGCATTGGGAGGATCCTGTTGGTTTGTTATTTTTGTATCAGGTATATTAGGGTTCGGGTTTTTGGCTGTCCTGAGGACATTTTAAGAGACTGGTTTAACAAAGGCTCTGAGGAGGAACGTATCTAGAGGCAGGCCCTTTGCCAGAGCAGGGTGCCGATGGTACAGTGAGCGAAGCAGGGCTAATACTGTGTACCAGCTGAAGGTTCCTCTCATTAGTGACTTCTTAGCAGTGCAGGCTCAAGGAACTGTGAACAGGGGACCAGGGATGCAACCAGGCAGCAGGGCTGAGAAGACGCTCTCTGCTTCTGCAGGGATCCAGAACGTTCAGTCTCAGGATTTAGGTCATGCTAGGAGCCTGTGTGGGTCTTTGAGGGACCCCCACCTCTATGTACAGCTGCTGGGCACAGCAGCATGAGTGAAATCTGAGCTTTCGGCCTCCAGCCAAGGTTACGCAAGGCAACAGCCATCCTGGATAGGAGCGTGCCTGCTTCGGGCAGAGTGAGAGGGGGGAGCAGGAGCCCTGGAGAGCAGTGTGGGGAAGTCTGAAAGCCAGCAGCTTTGGCAGAAACAGCTAAGCGCTCTGCTCTCGAACCTCCCCGTCCTACAGGCTGCTTCTTCCACCTGAAGGCAACCCACTGGAGCAGGGGGCCCTGTGGGCACAGGGTTACCTTGCTGCTGAACCCTGCGAGCGCTCCTGCAGGCCCCAGCTTCCAGCTCTGCTGGACGTTGCTGAATCCCGCGTGTGTGCCGAGGTGGGCTGGGTGGGAGCACACATGGACAGCCGGGGGCTGTGGGTATCCCCGGGTGACACCTCAGGTGCGGCTCCTGGCGTTCAGGTGCCCACAGGTTCACCCAGCCCCTCGGAGAAGGAGCTGCCAAGGGCTGCTGGCTCTTCTGTGCTGCCTGCTGCTCCGCTCCCAGCTCCTGCCTGGCCAGAAGGAGGTATCTCCAGGTCGGAGTGGTCCAGGGCAGCGTCCTTCCCCTGCTCCCTGGGTCTGGGGGTGCCCCAGAGCATCCCCTCTGGCTCCCCGCAGCTTGGAGAGGCTGCTGAGCTCCCCGCTGCCGCACTGCCCTTCTGGATGCTCTCCCGCCAGTTGTGAGCGTTGGATGCACTCGTGCGTTTCTCCCTCTTGGCCTCCTCCCCTTTCCATCCCTTCCTACCTCGCAAGGAGGGAATTCCGTCCAATCCTCTAGAATTAGAGCGGGAAGGAAGCACGCTGGAACCGTGGGGAGAGAGCTCGGGCTGCTGGCCGCTCACCTGCAGTGCCCTCACCCCGTACCGTGCCGAAACATCCCTGCAACAGAGGCGACAAAACATGGCGAAGGGCTGCTGCAGCCGCGGCCTAGCAAGATGGCGACCAGGCTGCAGCTGTGCCACAGGCCCCAGCCGTGCAGCGCGCCACAGAGCTGCGAGTTCCCCTGAGTTCCCCTGGTTCCTGGCGGGGACGGGGAGGGGAGGGAAGGGGATGAGCTTCCCAAGGCGGGCGGGAGGGTGCGCTTGCCAAAATGTCCCCACCCACAGGAACGTGCACTGGCTGCCTCTAACTCCCCAGGGGTGCGAGCTGACGTGGGCTTTTGCTAGCACACCCGCCCTCCCCCCCTTTGGAAATTCGGCCTTCGGAGTCTAATACATCATTGTTCTGCTTATAAATGTACTAAGTGTTGAGAATGTTTTGGTTTTTTCCTTAATTATAATTGTAATTGGCTTTTCCCCTTCTCTCTTGTTTATTTTTTTTCCCAACGCTGTCTTGCTTTGCACTGTGATTGCATGCCGCGCCCCGATGTGTCCTTCATGACGATGTCACATGGCTTGTTGCTGTGATTCCTGCCACGCCCCCAAATCCACCACATGTTGCCATGGTTACATAAAAACGCTCCACCCTCCCGTATGTCGCTTCCATGGTTCCCTTCCGAAAG
Seq C2 exon
TGCCCATGATGCACGGTGCTACGCCCACCACTGTGTCTGCAGCAACAACTCCTGCCACCAGCGTCCCCTTCGCTGCAACAGCTACCGCCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006066:ENSGALT00000009784:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.657 A=NA C2=0.953
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]