HsaINT0100458 @ hg38
Intron Retention
Gene
ENSG00000076770 | MBNL3
Description
muscleblind like splicing regulator 3 [Source:HGNC Symbol;Acc:HGNC:20564]
Coordinates
chrX:132382178-132384698:-
Coord C1 exon
chrX:132384663-132384698
Coord A exon
chrX:132382273-132384662
Coord C2 exon
chrX:132382178-132382272
Length
2390 bp
Sequences
Splice sites
5' ss Seq
TTGGTAGGT
5' ss Score
7.03
3' ss Seq
CTATGGTTTTCAACTGAAAGTGC
3' ss Score
0.98
Exon sequences
Seq C1 exon
GGCCAATACTGTGCATGGCACCCGCTTCAAATATTG
Seq A exon
GTAGGTTTTCTACAAAAATTATCAACATTTTCTAATCTGAAAAAATGTGTTTTTCTGTTGTGACTATGAAAGATGAATGACTGAAAGATGTGGCTGGAAATTTTCTGAGTATGTTAAGGTTTAACATGGTGCTTTCTGTTTTATGTCTTTGTAGCATCAAAATAGTCCTACTTTCTCAAGTCCTAGTTGGTTGCCACTGTGGCCAAATACTGGCCCTGTCATTTCTCTATTTCTACCCTAACAACAGCAACTGAAATATTAAAAAATCGTTTCTTTTACAATATTTGAAACTAGCCAGACTGGGCAGTTTTGTTCTTTGCTTAACATGTATTATTTAAAAATTGTAAAATACTTAAAATGTATAACTTGTAAAGTACAATGAAACAATTCCCACCTGAAAAAGTTATCTATAGGACTTAAAGCATTCAATGTTCCTATGTTGCGAGAGGATGAGTTCAGCAAAGCCAGAGGATTCTGCAGTGTTCTGTAATGAATCCTGTAGTGTTCTAGCCTGAAGCACCATTGGCACAGAAGCTAGGCACAACAGAATCATTTCAAAATGACTCTTTGAGTGTTACGTGATTTTTAACAAGCAGTTGCACACAGATCCTTTTGTTAGCCACTAACACAATATGATAGCCATCTCTAAACCATTTTATACAGCACTAATACTGAAGAGCATGAGAAAGGAATGGGGAGTTCACAGCTCCTACAGTCCTCATGGGCACAAGGAACAGACCAGGAGAAAATAGCTCTGTTCTATGCAAGGAGAAATGATCCCAACCCGTCCCACTCTACCGTCTCACATCAATCCAGGCCATCCCCTCCCTTTTGAGAGTTTGCAACAAATTGACCTTTGTCACCTTGGTGGACCAGAATAGATGCAGAGCCCCAAAAGCACTACTAACAGGCTTCTTGAGAATAAAGTTCAAAATGACAACCACATAGTAGCAGCACTCACTAACATAGCGAGATCTGAACCCTGGGAATGGAAGTGAGGCCCCTGTTACTGAGGGTTTGACTGTCTTCTGTAGGAATTAATAAACATTTCCATTAATACCAACAGGAGCACAATATGTATACCTTTGAATCATAATGTGTACAATTAGAACAGACTTCTGCAAGTTTGAGAAATGTGTCTTTGCCTTCATGTTTTGTGACAGTTTTCTTGAAGATGCTCTCTTGTCCTTTCACCTTCAGAGCTTTGCTTAGGAATGCAAACTGCATTCTTTAGTGGATCTGCTTCCTGTACAATTGCTGCACTCCCAAAGGGAAAACAAGAGTGTTTTTAGAATTGGCATATGAGACAACAGGGATGGCTCTGGGTAATGGGTAACTAGAGATAAATGGAAGGGATAACTATGGAGTTTCTGTTAATCACCATTTGGGGTACATTTTCAGTTTCTATGACATTGCACATGTTAATTTTTCTCTGGCCATTCATTTTCTCTTTAGACTTTCAGAAAATCTGAATTTAATTGATGTAGACATGATAAATTATTACATATGCATGCTTGCCATTCACACATTGCCATTCACACATTAATTCCCTGGTTTGCTTTCTGAAATGAGCTAGACATCAGAAAGCACCCAAAACGCTTTCTAAATGAGATAGAAACTAGAAAAGGCAAAGATAAAACATCCTGCAAGAGATTTCACAGCTGCTAACCATTGTAGCTATAATAGTTGCTGTGAAGACAAGATTTACTGTGAAGTACTCCATGTATTTGTTTGATAAATGGCCAAAGTTTCCCAGGAGTTTGCCAGAGGTGTACTTAAAAACCTGCATGCATAGTCCACTGTATTCTTCATATCTGCCCCCCTACCACATACCAACCAGTCTACCTACCATGTCTTTGCATGCAGATCAGGTAAGTATACATATAACTGCCTGTTTGCACCTGCAAATCTAGTGACGGCATTCATGTCCATAAGTCAGTGAACCTAAATTCCAATTTATGATTCCTTAATTCCATTTTGAATGTGCAGTCCAGTTACTTGTCTGCTTAACTAGCTTCAGATAGATAGCCCTTGTAACATTGGATTTTTGTTTTCATATGCATTCATTATAGCCCCTTCTGAAAATTTAGCCTTTTGAGTAAACTACAATGGGATTCTGCTCAAAAACTTACTAAATGTTGAGAATGGTTCCATTTTCCATATTGGTAACTATAATTGGCTTTCCCCTTTTCTCTTTTTAATTTTCCCCCCTTCCATGCTGTGTTGCTTTGCACTGACTGTGATTGCATGAACACCCTGATGTATTCATCGTTATGATGTCACATGGCTTGTTGCTGTGATACCTACCACACCTCATTCCATCGTAAATGTTATGGTTGCATAAATCCTCTACCCTCCCGTGTGTTGCTTCTATGGTTTTCAACTGAAAG
Seq C2 exon
TGCCCATGATGCACGGTGCTACACCTACCACTGTGTCTGCAGCAACAACACCTGCCACCAGCGTTCCGTTCGCTGCACCAACTACAGGCAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076770:ENST00000370839:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.427 A=NA C2=0.764
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development